PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542871.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28447.3 Da    PI: 9.465
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.5e-312978150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_010542871.1 29 KRIENATNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 78
                    79***********************************************8 PP
2K-box100.81.8e-33961933100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++++s++e +a+++qqe+akL+++i++Lq+++R+l+G++L+sLs+keL+ Le++Lek++++iRskK+elll++ie lqk+e el++e  +Lr++
  XP_010542871.1  96 STNTSSVQEINAAYYQQESAKLRQQIQMLQNSNRNLMGDSLSSLSVKELKTLENRLEKAMSRIRSKKHELLLAEIEFLQKREMELDNEGIYLRTR 190
                     45556699*************************************************************************************99 PP

           K-box  98 lee 100
                     ++e
  XP_010542871.1 191 IAE 193
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-432180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1182181IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-3322101IPR002100Transcription factor, MADS-box
CDDcd002651.51E-432296No hitNo description
PROSITE patternPS0035002377IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-332343IPR002100Transcription factor, MADS-box
PfamPF003191.3E-263077IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-334358IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-335879IPR002100Transcription factor, MADS-box
PfamPF014861.3E-24106191IPR002487Transcription factor, K-box
PROSITE profilePS5129714.594107197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSSWISLTAI DYVNTSELDK MGRGKIEIKR IENATNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALIVFSS RGRLYEYANN NIRSTIERYK KACSDSTNTS SVQEINAAYY QQESAKLRQQ  120
IQMLQNSNRN LMGDSLSSLS VKELKTLENR LEKAMSRIRS KKHELLLAEI EFLQKREMEL  180
DNEGIYLRTR IAEVERLQQH HSMVSGQEIN AIEALASRNF FGHNLIGSGA STSTGAAYSD  240
LQDKRTLHLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-212189169Myocyte-specific enhancer factor 2B
1tqe_Q2e-212189169Myocyte-specific enhancer factor 2B
1tqe_R2e-212189169Myocyte-specific enhancer factor 2B
1tqe_S2e-212189169Myocyte-specific enhancer factor 2B
6c9l_A2e-212189169Myocyte-specific enhancer factor 2B
6c9l_B2e-212189169Myocyte-specific enhancer factor 2B
6c9l_C2e-212189169Myocyte-specific enhancer factor 2B
6c9l_D2e-212189169Myocyte-specific enhancer factor 2B
6c9l_E2e-212189169Myocyte-specific enhancer factor 2B
6c9l_F2e-212189169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542871.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542871.10.0PREDICTED: agamous-like MADS-box protein AGL11 isoform X1
SwissprotQ388361e-134AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLC1IDW91e-133C1IDW9_CAPBU; SEEDSTICK-like protein
STRINGXP_010542871.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49942234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-136MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]