PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542875.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26191.8 Da    PI: 9.8173
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.2e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_010542875.1  9 KRIENATNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58
                    79***********************************************8 PP
2K-box101.11.5e-33761733100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +++++s++e +a+++qqe+akL+++i++Lq+++R+l+G++L+sLs+keL+ Le++Lek++++iRskK+elll++ie lqk+e el++e  +Lr++
  XP_010542875.1  76 STNTSSVQEINAAYYQQESAKLRQQIQMLQNSNRNLMGDSLSSLSVKELKTLENRLEKAMSRIRSKKHELLLAEIEFLQKREMELDNEGIYLRTR 170
                     45556699*************************************************************************************99 PP

           K-box  98 lee 100
                     ++e
  XP_010542875.1 171 IAE 173
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.118161IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-43160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-33281IPR002100Transcription factor, MADS-box
CDDcd002651.77E-43276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2486171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.59487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIEIKR IENATNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  60
NIRSTIERYK KACSDSTNTS SVQEINAAYY QQESAKLRQQ IQMLQNSNRN LMGDSLSSLS  120
VKELKTLENR LEKAMSRIRS KKHELLLAEI EFLQKREMEL DNEGIYLRTR IAEVERLQQH  180
HSMVSGQEIN AIEALASRNF FGHNLIGSGA STSTGAAYSD LQDKRTLHLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-21169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-21169169Myocyte-specific enhancer factor 2B
1tqe_R1e-21169169Myocyte-specific enhancer factor 2B
1tqe_S1e-21169169Myocyte-specific enhancer factor 2B
6c9l_A1e-21169169Myocyte-specific enhancer factor 2B
6c9l_B1e-21169169Myocyte-specific enhancer factor 2B
6c9l_C1e-21169169Myocyte-specific enhancer factor 2B
6c9l_D1e-21169169Myocyte-specific enhancer factor 2B
6c9l_E1e-21169169Myocyte-specific enhancer factor 2B
6c9l_F1e-21169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269|PubMed:22176531, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542871.11e-167PREDICTED: agamous-like MADS-box protein AGL11 isoform X1
SwissprotQ388361e-134AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBLC1IDW91e-133C1IDW9_CAPBU; SEEDSTICK-like protein
STRINGXP_010542871.11e-167(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-136MIKC_MADS family protein
Publications ? help Back to Top
  1. Ezquer I, et al.
    The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat.
    Plant Cell, 2016. 28(10): p. 2478-2492
    [PMID:27624758]