PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543063.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 422aa    MW: 45766.7 Da    PI: 8.2438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.6e-31195253259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++v+++tYeg+Hnh+
  XP_010543063.1 195 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCADDTSVLITTYEGNHNHP 253
                     7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33179255IPR003657WRKY domain
SuperFamilySSF1182903.66E-28188255IPR003657WRKY domain
PROSITE profilePS5081129.597189255IPR003657WRKY domain
SMARTSM007742.7E-38194254IPR003657WRKY domain
PfamPF031062.3E-27196253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDEHKEGRRE IAFLHSGEFL RRDSGVEHHR KPPIKEVDFF AAKSHQPRND QTKVDGSSSG  60
SASRLDVREP KDEKFIRDEI HKSCSELHNR LLLAKHNHLQ EDNHILSNGL SSCDSRALEH  120
ERAIISSKGA LIDQTPSSPA ADGNPTTAEK QFSGNSGRSS PETQNLVETK TNDERNPERK  180
TRVSVRARSE NPTISDGCQW RKYGQKMAKG NPCPRAYYRC TMATGCPVRK QVQRCADDTS  240
VLITTYEGNH NHPLPPSATA MAATTSSAAS MLFSGSTSSD GAMQSSTAAD IFHSSILAYA  300
STVATLSASA PFPTITLNLT TPPEYSSSAA ASAHFPPHRR RILGQYGPTA VPLPNVTDHV  360
MMRSPFLSGQ SQTCMVETVR AAIAADPNFT VALAAAISNI IGGSGNNNNN NNNNNNNNNT  420
FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22181256175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058314.10.0PREDICTED: probable WRKY transcription factor 47, partial
SwissprotQ9ZSI73e-84WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A2H5NXV62e-94A0A2H5NXV6_CITUN; Uncharacterized protein
TrEMBLV4U6R22e-94V4U6R2_9ROSI; Uncharacterized protein
STRINGXP_010543063.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.15e-84WRKY family protein