PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543264.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 535aa    MW: 57627.2 Da    PI: 7.2999
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.1e-093603922254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_010543264.1 360 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 392
                     89*****************************88 PP
2BELL103.21.8e-33224292472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e  kk++kL+s+l+eV+krYkqy+eql +vi sFe+vaglg+a+p++slAlka+S+hF+cLk+ai++q+
  XP_010543264.1 224 ESSKKRSKLISMLDEVYKRYKQYYEQLLAVIESFECVAGLGNAAPFASLALKALSKHFKCLKNAITDQL 292
                     6789**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.1E-57166290IPR006563POX domain
PfamPF075262.6E-35171289IPR006563POX domain
SMARTSM003891.6E-9336400IPR001356Homeobox domain
CDDcd000867.36E-12336397No hitNo description
SuperFamilySSF466896.42E-17340403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-27340400IPR009057Homeodomain-like
PfamPF059201.7E-18353392IPR008422Homeobox KN domain
PROSITE profilePS5007111.726355396IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MADAFEPYHI PQQSRRDKLR ILSHSQNPSL DHTDFHFHPP PSSAAIFPLI DTDLFSSAAG  60
EPHALGNFMG FLGGASVAGS PSSSAAAVHG GDRACDQAFS GGNVLVFKPE PLSLSLASHH  120
AHDQDNNNSN NDLHRFGTGY EVVVPGGGGS AGSRGSGPLG PLGPFTGYAS ILKGSRFLKP  180
AQQLLEEFCN VGRGIYSDRI EDEDSSPMFD PTVDNLAASS GGGESSKKRS KLISMLDEVY  240
KRYKQYYEQL LAVIESFECV AGLGNAAPFA SLALKALSKH FKCLKNAITD QLQFTNKAQQ  300
QQGDHVVMNS EKFESLRFGN DLGHRLGFSN HHPPVWKPHR GLPERAVTVL RAWLFDHFLH  360
PYPTDTDKLM LAKQTGLSRN QVSNWFINAR VRLWKPMVEE IHMLETRQTQ KSSSSAAAQR  420
PQHTSAPRRT RNDDVPGGEF SGNEALGFTY GAQNVPVLST NGVSLTLGLH HQTNGVGLTE  480
PFPVSAAQRF GLGIGGDGYV GSGGGGVGFG GQNRQLSRGF VGGDSSNQLL HDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-16342400159Homeobox protein Meis2
5bng_B1e-16342400159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543264.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543264.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-173BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLR0FE520.0R0FE52_9BRAS; Uncharacterized protein
STRINGXP_010543264.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-160TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]