PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543545.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 1303aa    MW: 145575 Da    PI: 6.8164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005711931216323
                      ET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirt.H 23  
                      C+   C++sF rk +L+ H r+ +
  XP_010543545.1 1193 CNleGCKMSFERKADLQMHRRNrC 1216
                      88889****************876 PP
2zf-C2H211.40.0009712151238223
                      EET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                      +C+   Cgk F+ + +L  H+r+H
  XP_010543545.1 1215 RCTheGCGKKFRAHKYLLLHQRVH 1238
                      588889****************99 PP
3zf-C2H211.40.00112741300123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      ykC+   Cg sF+  s++ rH r+  H
  XP_010543545.1 1274 YKCKveGCGLSFRFVSDYSRHRRKtgH 1300
                      99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.1E-131555IPR003349JmjN domain
PROSITE profilePS5118313.5921657IPR003349JmjN domain
PfamPF023758.3E-151750IPR003349JmjN domain
SMARTSM005582.0E-45286455IPR003347JmjC domain
PROSITE profilePS5118435.298289455IPR003347JmjC domain
SuperFamilySSF511973.02E-26300453No hitNo description
PfamPF023739.9E-36320438IPR003347JmjC domain
SMARTSM003552911911213IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.18E-712021250No hitNo description
PROSITE profilePS5015712.96512141243IPR007087Zinc finger, C2H2
SMARTSM003550.07412141238IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-612151243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012161238IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.0512441273IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-912441268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01412441268IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012461268IPR007087Zinc finger, C2H2
SuperFamilySSF576675.47E-1012541296No hitNo description
Gene3DG3DSA:3.30.160.601.8E-1012691297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.3312741300IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.45212741303IPR007087Zinc finger, C2H2
PROSITE patternPS00028012761300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1303 aa     Download sequence    Send to blast
MGNVEIPDWL KGLPLAPVYR PTDTEFADPI AYISKIEKEA SAIGICKIIP PHPKPSKKYV  60
FHNLNKSLSK CPELGSNVGV MKTGQADGGN DGEARAVFTT RQQELGQSAK RARGGESNSN  120
PQSGGVKQVW QSGEVYTLEQ FESKSKAFSR SHLGMIKDVS PIVIESLFWK AASNKPIYIE  180
YANDVPGSGF GEPEGHSRYL RQRRKKRQRG SYQRRREADV ANEIENNRND SVCQEPAFKD  240
DQRLCPETGR TNVDSPSLSS DEGSHSSRQK KNIDFTNDME GSAGWKLSNS SWNLQMIARS  300
PGSITRFMPD DIPGVTSPMI YIGMLFSWFA WHVEDHELHS LNFLHTGSPK TWYAIPGDYA  360
FEFEEIICKQ AYGGHVDQLA ALTQLGEKTT LMSPEMIVAS GIPCCRLIQN PGEFVVTFPR  420
SYHVGFSHGF NCGEAANFGT PQWLNIAKEA AVRRAAMNYL PMLSHQQLLY LLTMSFVSRV  480
PRSLLPGARS SRLRDRQREE REFLVKKAFV EDMLNENKIL SVLILDPGYR LVSWDPDLLP  540
RQNAESLATA ALTTVTTTIL SSAVSEGGFE GHSETQTNDK KTTLLEELSL FMEKLSDVYD  600
NDDDDDLLND FQVDSGTLPC VACGTLGFPF MAVVQPSEKT LKDLAEGSDL DAQEILIPAP  660
SRFECGWNTS CRYSRPRIFC LEHAVEVQKL VRLRGGVKVL VICHKDFLKI RAHATVVAEE  720
VNVSFNYNDV PLETASREDL GLIDLAIEDE ENNEHGEDWT SKLGINLRYC VKVRKNSPSK  780
KIHHALSLGG LFSSTRDSQD LSSIKWMQRR SRSKAKPSCT SDNTPCEQLE VKVDGSFREN  840
LDSTVRRKEE KIIQYSRRKK LKPKQDPEVD SAVKSKDLGS TSDKLDDSSQ RQALASANGT  900
PFILSHRQER AEKDPKVTDE SCSASGGNIT SNSSMVNEVS DLSTAINSVQ QVYSSTSIND  960
GTVEDLKEEF GVRNRENEEL QSQPMEPTDE EAIPGACTEM EGDWAVCSLK GSSPTPGLGC  1020
NGEDSPARVG LEVPEGNNAS QKSNVERVKD DESLPHNHAI RNDDRAPLNG SKTSEDELCT  1080
ENLPNVSEVA CPENTEVIDT SKSDSVKEGK KRKIEPEAEM KNNPETSSSF IRSPCEGLRP  1140
RVRGESTSGT PANIGEMTRK EKPTSKKVKK TSNTDSGRGQ DNKEAVTSHH HGCNLEGCKM  1200
SFERKADLQM HRRNRCTHEG CGKKFRAHKY LLLHQRVHND DRPFKCQWKG CLMTFKWQWA  1260
RTEHLRLHTG ERPYKCKVEG CGLSFRFVSD YSRHRRKTGH YVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-55269469137346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-55269469137346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202215RRKKRQRGSYQRRR
2203214RKKRQRGSYQRR
3204215KKRQRGSYQRRR
4845859RRKEEKIIQYSRRKK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543545.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543545.10.0PREDICTED: probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLV4LD480.0V4LD48_EUTSA; Uncharacterized protein
STRINGXP_010543545.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115202731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]