PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543775.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 205aa    MW: 23189.3 Da    PI: 5.9968
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543775.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.17.2e-3971071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC++dCv+apyf  +q +++f +vhk+FGasnv+kll +lp ++r++a+ ++ +eA ar+rdPvyG+v++i++lqqq+++l++e+
  XP_010543775.1   7 SCGACKFLRRKCSNDCVFAPYFSYDQaSAHFSAVHKVFGASNVSKLLLHLPVQNRSAAAITISFEALARMRDPVYGCVSHIFALQQQVMSLQEEI 101
                     6***********************99789****************************************************************** PP

          DUF260  95 allkee 100
                     +ll+++
  XP_010543775.1 102 ELLGTQ 107
                     998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7916108IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-367104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTGTGSSCGA CKFLRRKCSN DCVFAPYFSY DQASAHFSAV HKVFGASNVS KLLLHLPVQN  60
RSAAAITISF EALARMRDPV YGCVSHIFAL QQQVMSLQEE IELLGTQMAN FGYCQVPTYQ  120
SNKTQQQLMS QLQPVTMQDL HNQTEEAINF TSFGDQFMYG QLGENCLHHD QFFIADPQVL  180
VNHHPWLLNM DYYTTLMDVE NPAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3431127115LOB family transfactor Ramosa2.1
5ly0_B7e-3431127115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543775.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543775.11e-155PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS81e-69LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7LZ362e-69D7LZ36_ARALL; Predicted protein
STRINGXP_010543775.11e-154(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.16e-72LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]