PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543869.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 573aa    MW: 63393.8 Da    PI: 6.2599
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.7e-092813132254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ +++  LAk++gLt +qV++WF N R +
  XP_010543869.1 281 HPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 313
                     89*****************************88 PP
2BELL41.82.7e-141902243872
            BELL  38 eavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     ++vag gsa+ YtslAl +iS++Fr+Lkdai++qi
  XP_010543869.1 190 DEVAGSGSARTYTSLALETISKQFRSLKDAIIGQI 224
                     78********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.8E-20107222IPR006563POX domain
PfamPF075261.6E-12110192IPR006563POX domain
PfamPF075261.4E-8190220IPR006563POX domain
PROSITE profilePS5007112.034254317IPR001356Homeobox domain
SMARTSM003891.4E-9257321IPR001356Homeobox domain
CDDcd000861.57E-11257318No hitNo description
SuperFamilySSF466893.55E-17258324IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28260323IPR009057Homeodomain-like
PfamPF059202.7E-18274313IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MVLTNSATYV HFNSVVDQDP PPSSSSAAAS STGNLLASPH APPQRFHGYR NNNVPSAVLH  60
GFIPRVYGTP IEAAREATRA YQQGLSLSLS SEQQQKSRDS ILASNLQGFV SRSKYLMAVQ  120
ELLKEVVSVN DNKTGTENKN GISLSSKRTG DDVDEKTTGE SAGGEETGGK AAAEGQEIQM  180
KKARLVIMLD EVAGSGSART YTSLALETIS KQFRSLKDAI IGQIKAFSKY LGQEEPKLKF  240
LDHNLRHGMV QQSNNAWRPQ RGLPERAVTV LRAWLFDHFL HPYPKDSDKI MLAKQTGLTR  300
SQVSNWFINA RVRLWKPMVE EMYVEETKDQ DKNNDSTKEK ISPNVNQDED SMPKSVGYIA  360
KQEKIPVSEV PQNSFMNNNG HSSSISISVP LSASVSETGF SILGVSEFEG NMQGNPKKLR  420
TDELLHSPEL VPSMEMDADK VGEVRNDNIS PRFRDEKEFP FFANNTNFIG GFGPYPICET  480
GRFEAEEFTP SYSGNINGVS LTLGLPHCES FSVSATHQNF FPNQNIQIGR NVEMSEPNEF  540
GASEPRTSPA AYNPINLQNQ RRFLSQLLPD FVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16263321563Homeobox protein Meis2
3k2a_B8e-16263321563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543869.10.0PREDICTED: BEL1-like homeodomain protein 1 isoform X2
SwissprotQ9SJ561e-106BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2I4DRV51e-165A0A2I4DRV5_JUGRE; BEL1-like homeodomain protein 1
STRINGXP_010543867.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-99BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]