PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543882.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 937aa    MW: 103668 Da    PI: 8.8115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-0861101954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri ++f  L++++P        K++ ++ L +A+eY+k L
  XP_010543882.1  61 ARERRHRISDRFKILQSMVPGG-----SKMDTVSLLDEAIEYVKFL 101
                     699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25652101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-1357115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1258107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1158105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-1058105No hitNo description
PfamPF000105.1E-662101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.3003.7E-5240255IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525402.47E-15242389IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136713.8E-14246371No hitNo description
Gene3DG3DSA:3.40.50.3002.1E-20256380IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.220.102.5E-5468519No hitNo description
SuperFamilySSF529492.16E-16526665No hitNo description
PROSITE profilePS5115411.74532797IPR002589Macro domain
Gene3DG3DSA:3.40.220.108.7E-16544663No hitNo description
SMARTSM005060.0014544779IPR002589Macro domain
PfamPF016612.9E-5567651IPR002589Macro domain
SuperFamilySSF541972.21E-34733898IPR011146HIT-like domain
PROSITE profilePS510848.853742851IPR011146HIT-like domain
PfamPF119696.1E-25743855No hitNo description
Gene3DG3DSA:3.30.428.107.7E-13743847IPR011146HIT-like domain
PROSITE patternPS008920824842IPR019808Histidine triad, conserved site
Gene3DG3DSA:3.40.50.3003.7E-5855912IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF162781.2E-7860913IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 937 aa     Download sequence    Send to blast
MTKKTMDIHF SPISNRNPNS CTSSSSSSLH RRRNKKGKTG DTKRDSPPAT KLSTDPQSVA  60
ARERRHRISD RFKILQSMVP GGSKMDTVSL LDEAIEYVKF LKAQIWLHQN LMLFFDHATP  120
FCSAAGDVTG VDNGPCTTTS TGSVSSASDA YNYAPMSETY LQTLPPEYNS WFSPVWKLHF  180
GGYTVSRFAW VETPRTRNEH VLHDTHYGLP PQASENFKGT GSSNRQEKMD MEIDDSPEGE  240
KTEPTVVMLV GAPGSGKSTF CDTVMRSSRR PWVRVCQDTI NNGKAGTKAQ CLKMAINALK  300
ESNSIFIDRC NLDRDQRSEF VKLGGAEVEV HAVVLDLPAQ VCISRSVKRT GHEGNLQGGR  360
AAAVVNRMLQ SKELPKLSEG FSRITFCYSD KDVENAVSSY SLLGPKDTLP SGCFGQKNTN  420
AKSQLGIMKF FKKVNALPGP ASKEASTSQE SNEKTAKKEE NLSLIPSAQL TSTDIIPTLA  480
FPSISTADFQ FDLEKAADII VEKVEEFLPM LGNARVVLVD LSHGSKILSL VKTKASQKNI  540
DSARFFTFVG DITKLRSEGG LQCSAIANAA NWRLKPGGGG VNASIFMAAG SDLEAATRQR  600
ANSLLPGKAV VVALPSTCPL VCAEGITHVI HVLGPNMNPK RPNYLNNDYT NGCKILREAY  660
TSLFEGFLSI IKNQSKLPKR RNETTRSGSG GEEIKEDPER NKKCKGLQDV VIADESNTGA  720
VGHVRDGGKS KSKGWGSWAL ALYNIAMQPD RHENIVLEVL DDIVVINDQY PKARKHLLII  780
ARQEGLDRFA DAQREHLQLL QKMHDVGSKW VKRFWDDDPS LVFRLGYHSV PSMRQLHLHV  840
ISQDFDSDHL KNKKHWNSFT SSFFRDSVDV MEEINVQGMA TVASEDVLTA ELRCHRCKSA  900
HPSIPKLKSH IRSCRAPFPD HFLQNNRLLT HPDSETD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A2e-8847867237231Basic helix-loop-helix, putative, expressed
5lw0_B2e-8847867237231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058413.10.0PREDICTED: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGXP_010543882.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.10.0APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]