PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544032.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 168aa    MW: 19590.9 Da    PI: 10.352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000291239229
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPk 29
                    r+  n rE+ RR r+++ f+ L +l+ +
  XP_010544032.1 12 REQRNLREKDRRMRMKHLFSHLSSLVSN 39
                    7889*********************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.12E-91077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-51272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEEERETSSL LREQRNLREK DRRMRMKHLF SHLSSLVSNK RLPVPQLIDE ATIRMKQLKE  60
RVRELKQKKE RLLGGRVEEE NRLRFSPSLH VSARESTVEL NLIIGPDAMN FALLRIMTAL  120
EEEGAEIMSV NLHNMEHKTI CTIIVKAIIS RIGIDASRIE KTVRDIIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11621LREKDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544032.11e-116PREDICTED: uncharacterized protein LOC104816774
SwissprotF4I4E18e-49BH167_ARATH; Transcription factor bHLH167
TrEMBLD7KLF81e-47D7KLF8_ARALL; T10O24.23
STRINGXP_010544032.11e-115(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.13e-48bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]