PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544187.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 342aa    MW: 37984.4 Da    PI: 9.5591
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1056.3e-33231287158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+I++RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRgsgGrF
  XP_010544187.1 231 QEPVYVNAKQYQAIVRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGSGGRF 287
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-35229290IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.521230290IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-28232287IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.6E-24233255IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.6E-24264287IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MWRNMALRWA TRESKNEFEL IPPRKRNQKK NRADASDCFV FLKLKSQGIG DMQSKSESGN  60
QVVVSDVHPV SSSSIISSEP WWRAVGYNAN SFVEAGEKGE NSGKLSVSEN QNTFESNGAK  120
LPPNNAGVDR GDHSHKESHV TASSQSGGEY TADNQELTHL LSVIPAAASD ECLTQPPQLE  180
LIGHSACASW KQFQDPYYGG MMGSCGHQPL GFVSYGEMPH TRMPLPPEVA QEPVYVNAKQ  240
YQAIVRRRQA RAKAELEKKL IKSRKPYLHE SRHQHAMRRP RGSGGRFAKK TEEKGNADDT  300
SYSPVHQGSA YKRREEGDCL GQQLNSMSST ANRPSQTRLA IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18231287258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544187.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544187.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X2
SwissprotQ945M93e-96NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLV4NMV53e-99V4NMV5_EUTSA; Uncharacterized protein
STRINGXP_010544186.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-92nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]