PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544248.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 231aa    MW: 26421.1 Da    PI: 6.9571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-1173120454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE++RRdr+N++f eL ++l +    +  K +K +iL  Av+ +++L
  XP_010544248.1  73 SKACREKQRRDRLNDKFMELSSILEHG---RPSKTDKPTILMDAVRMVNEL 120
                     5678**********************8...789*************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.91369120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-973120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-873125No hitNo description
Gene3DG3DSA:4.10.280.107.8E-1274133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-875126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-1375142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1702.1E-4134168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVFPENPNWF CDYNLVDGDF SVHNSVVPWP IELISGSDSL SAEIDGFLGD LDGLNEPASR  60
KRLKSESCTG SNSKACREKQ RRDRLNDKFM ELSSILEHGR PSKTDKPTIL MDAVRMVNEL  120
RVEAQKFKEL NSSLQEKIKE LKEEKHELRD EKQKLKTEKE KLEQQLKMVK AHHHHQPQPI  180
FLPNPQAVPQ VQAPGNKLVQ FPSYPGFAMW QFMPPASVDT SQDHVLRPPV A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544248.11e-172PREDICTED: transcription factor bHLH115
SwissprotQ9C6821e-115BH115_ARATH; Transcription factor bHLH115
TrEMBLE4MY091e-113E4MY09_EUTHA; mRNA, clone: RTFL01-30-I24
TrEMBLV4JXZ41e-113V4JXZ4_EUTSA; Uncharacterized protein
STRINGXP_010544248.11e-171(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.14e-85bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]