PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544250.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 429aa MW: 46448.8 Da PI: 6.1287

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.7e-06	320	358	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk L XP_010544250.1 320 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 358 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.63E-6	305	363	No hit	No description
PROSITE profile	PS50888	12.493	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-11	319	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	323	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MGDEFSNSGN GNWWKASTSS SSSTCLSPGI GCGTLGGFGW APETTPENIN KERSSSIESG 60 GSVVFLDHKL HHDPSSDHHQ HVQMIGLGLS SQPFDQWNQS LLRSDNKAET SFRVMVNSNA 120 NASTDVSMNA SSSYQQESGS SQASLWRDSS ANVEFKTQLS NRGFFLDHTQ FSPHASSSDS 180 TVTCQSFAMD NSSTTLYSNP NSSSNVFQGT FLGSDQPDRN QSSSLSYSQY GNFGLSPLRF 240 SNNTTFWNPT AAAHDVSPRF FPAAALQSPE IQAPSFEEKP KSVPEIRDPS TVAAKRSGGG 300 QPAAKRSKNE AASPSPTFKV RKEKMGDRIA ALQQLVSPFG KTDAASVLSE AIEYIKFLHQ 360 QVAALSSPYL KTGASLQQQQ ICDQSKDLEE PEQDLRSRGL CLVPVSSTFP VTHDTTVDFW 420 TPTFGGSFR

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MGDEFSNSGN GNWWKASTSS SSSTCLSPGI GCGTLGGFGW APETTPENIN KERSSSIESG  60
GSVVFLDHKL HHDPSSDHHQ HVQMIGLGLS SQPFDQWNQS LLRSDNKAET SFRVMVNSNA  120
NASTDVSMNA SSSYQQESGS SQASLWRDSS ANVEFKTQLS NRGFFLDHTQ FSPHASSSDS  180
TVTCQSFAMD NSSTTLYSNP NSSSNVFQGT FLGSDQPDRN QSSSLSYSQY GNFGLSPLRF  240
SNNTTFWNPT AAAHDVSPRF FPAAALQSPE IQAPSFEEKP KSVPEIRDPS TVAAKRSGGG  300
QPAAKRSKNE AASPSPTFKV RKEKMGDRIA ALQQLVSPFG KTDAASVLSE AIEYIKFLHQ  360
QVAALSSPYL KTGASLQQQQ ICDQSKDLEE PEQDLRSRGL CLVPVSSTFP VTHDTTVDFW  420
TPTFGGSFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544250.1	0.0	PREDICTED: transcription factor bHLH123-like
Swissprot	Q8GXT3	1e-137	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A3P5Z7X7	1e-145	A0A3P5Z7X7_BRACM; Uncharacterized protein
STRING	XP_010544250.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-137	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]