PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544337.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 208aa MW: 23665.5 Da PI: 6.787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.6	3.8e-47	14	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrF+Ptd el+++yL++k++g++ ++ vi+ev+iyk+ePwdLp + + ++e+ew+fF +r ++y++g++++rat+ gyWk+tgk+++v+s XP_010544337.1 14 FPGFRFSPTDVELICHYLRRKIAGDESSV-AVIPEVEIYKFEPWDLPdQLILKSESEWFFFGTRGRRYPHGSQRKRATELGYWKTTGKERNVKS- 106 69**********************999.89***********767777889**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+k+tLvf+ grap g++t W+mhey + XP_010544337.1 107 GSQVVGTKRTLVFHLGRAPWGQRTGWIMHEYCM 139 9****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-54	6	154	IPR003441	NAC domain
PROSITE profile	PS51005	51.213	13	155	IPR003441	NAC domain
Pfam	PF02365	4.9E-25	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MPTREALIAA SEVFPGFRFS PTDVELICHY LRRKIAGDES SVAVIPEVEI YKFEPWDLPD 60 QLILKSESEW FFFGTRGRRY PHGSQRKRAT ELGYWKTTGK ERNVKSGSQV VGTKRTLVFH 120 LGRAPWGQRT GWIMHEYCMI GAPRDELVVC RLRKNSDFQA GSSQGQMHDG KCGDTESYSW 180 SESEQKPSNH AADTNAEPSD YVETELAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	15	154	19	164	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	15	154	19	164	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	15	154	19	164	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	15	154	19	164	NO APICAL MERISTEM PROTEIN
3swm_A	3e-43	15	154	22	167	NAC domain-containing protein 19
3swm_B	3e-43	15	154	22	167	NAC domain-containing protein 19
3swm_C	3e-43	15	154	22	167	NAC domain-containing protein 19
3swm_D	3e-43	15	154	22	167	NAC domain-containing protein 19
3swp_A	3e-43	15	154	22	167	NAC domain-containing protein 19
3swp_B	3e-43	15	154	22	167	NAC domain-containing protein 19
3swp_C	3e-43	15	154	22	167	NAC domain-containing protein 19
3swp_D	3e-43	15	154	22	167	NAC domain-containing protein 19
4dul_A	2e-43	15	154	19	164	NAC domain-containing protein 19
4dul_B	2e-43	15	154	19	164	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544337.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544337.1	1e-156	PREDICTED: NAC domain-containing protein 40-like
Swissprot	Q9XIN7	3e-91	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	A0A087G5N5	9e-93	A0A087G5N5_ARAAL; Uncharacterized protein
STRING	XP_010544337.1	1e-156	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10453	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	1e-93	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]