PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544359.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 165aa    MW: 18477.7 Da    PI: 10.123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.2e-2157107356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ +++g+
  XP_010544359.1  57 YRGVRRRP-WGKYAAEIRDPKKNG--ARIWLGTYETAEDAAMAYDRAAFEMRGA 107
                     9*******.***********9998..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3756120IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2456115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-3356115IPR001471AP2/ERF domain
PROSITE profilePS5103224.06556114IPR001471AP2/ERF domain
PfamPF008472.2E-1457106IPR001471AP2/ERF domain
PRINTSPR003675.7E-115768IPR001471AP2/ERF domain
CDDcd000183.22E-2857116No hitNo description
PRINTSPR003675.7E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEGELACESS SSSSSKVLES IRRYLLEEDE SEEPRSSTEE EGNRKREPPS PVRGGSYRGV  60
RRRPWGKYAA EIRDPKKNGA RIWLGTYETA EDAAMAYDRA AFEMRGAKAK LNFPHLIGTD  120
GVEPARVSNR RRRLPENADP AGKRRSNTSI INIAARLPSL GFRIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3153114263ATERF1
3gcc_A2e-3153114263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023883e-32AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAF3250893e-32AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds.
GenBankAF3705403e-32AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds.
GenBankAY0724713e-32AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds.
GenBankAY0883873e-32AY088387.1 Arabidopsis thaliana clone 6397 mRNA, complete sequence.
GenBankCP0026853e-32CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544359.11e-115PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A1J3G8C61e-55A0A1J3G8C6_NOCCA; Ethylene-responsive transcription factor 13
STRINGXP_010544359.11e-115(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-24ethylene-responsive element binding factor 13