PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544366.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 628aa    MW: 68197.1 Da    PI: 5.2145
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS343.82.8e-1052746252374
            GRAS   2 velLlecAeavss.gdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     +e+L+++Ae ++s gd +l qa+Larl+++ +sp g+p+qR+a+yf+eAL++ l++       + +ps++s+++ + ++ a+k fse+sP+l+f+
  XP_010544366.1 274 IEQLFKAAELIESgGDPALLQAILARLNQQlSSPFGKPFQRAAFYFKEALHKLLNN-------ISSPSSSSSYSLIFKIGAYKSFSEISPVLQFA 361
                     789*********978999**********998************************9.......44677777788********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     ++t Nqa+le+++g ++vHiiDfdi++G+QW++L+q+L  R++gppsl+iT+++sp+++++ el  t+e+L++fA+ ++++fe++vl   +l+ l
  XP_010544366.1 362 NFTSNQALLESFHGLDHVHIIDFDIGYGGQWASLMQELVLRENGPPSLKITVFASPATHDEVELGFTQENLKHFASDINISFEIQVL---SLDLL 453
                     **************************************************************************************9...45555 PP

            GRAS 190 .eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++++ +  ++Ea+aVnl+++  + +          ++vL++vk++sP+++v++++ +++++ +F ++++++l+ ++al++s++a   ++ ++++
  XP_010544366.1 454 nSVSSWNPPEREAVAVNLSFSNIQSY---------LPSVLRFVKQVSPTILVCSDRGCERTDLPFPQQLVHSLQSHVALLESIDAV-NANLDAMQ 538
                     2346666788**********655554.........566*********************************************887.56779*** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     k+Er+l++++i+++v ++g++      +   W+++++++GF+pv+ s+++++qa++l+++++++g++ve++++slvl+W++r+Lv vSaWr
  XP_010544366.1 539 KIERFLIQPSIEKLVVNRGRS----IDRRVPWQAMFMQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKQNSLVLCWQRRELVGVSAWR 625
                     ********************9....444458***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.224247605IPR005202Transcription factor GRAS
PfamPF035149.7E-103274625IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MPLPFEEFQG KGVSDFSSSS SSSCSEPLSS LLRCREITTA AADLCYAGGS ISEPTSVLDA  60
VRSPSTLTTS SSTLSSSHGG NNCGGGGGGV PAVSVNPAAS DEKSGEMGVE EWDNVLPGSP  120
SHEHSILRLI MGDSEDPSIG LNKILQTSTA FQSGPSSEFS AVGFGVLDPG FGLEAAPVSA  180
DSLCSSGFSV DIAPTTNPLL PPSVPPLFPT HETFKGLDEK PQVIINQNQV HFTQNPPMFM  240
PVPHGLFQDH NFPVSPPPAK RLNSGPMAPQ QEIIEQLFKA AELIESGGDP ALLQAILARL  300
NQQLSSPFGK PFQRAAFYFK EALHKLLNNI SSPSSSSSYS LIFKIGAYKS FSEISPVLQF  360
ANFTSNQALL ESFHGLDHVH IIDFDIGYGG QWASLMQELV LRENGPPSLK ITVFASPATH  420
DEVELGFTQE NLKHFASDIN ISFEIQVLSL DLLNSVSSWN PPEREAVAVN LSFSNIQSYL  480
PSVLRFVKQV SPTILVCSDR GCERTDLPFP QQLVHSLQSH VALLESIDAV NANLDAMQKI  540
ERFLIQPSIE KLVVNRGRSI DRRVPWQAMF MQMGFSPVTH SNFTESQAEC LVQRTPVRGF  600
HVEKKQNSLV LCWQRRELVG VSAWRCRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3328662515375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544366.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A087GL400.0A0A087GL40_ARAAL; Uncharacterized protein
STRINGXP_010544366.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.10.0GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]