PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544370.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

YABBY

Protein Properties

Length: 219aa MW: 24535.1 Da PI: 8.5152

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	226.1	9.4e-70	17	188	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee....lleelkveeenlksnvekees 91 d+f ss+q+Cyv+C fC+t lavsvPs+sl+k+v vrCGhC++llsvn++ ++ + hl +s+ + llee+++ + n ++ + ++ + XP_010544370.1 17 DHFASSDQLCYVHCHFCDTFLAVSVPSSSLLKTVMVRCGHCANLLSVNMRALFlPPVSNQLHLPHSFFTPppphLLEEMRNGTPNSSVVMAHDPN 111 799*****************************************9988765234455557777776445666***99999988888877 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +s v++ ++ + + +e+p++ppv+r Pekr rvPsaynrf+keeiqrika+nPdishreafsaaaknWahfP+ih XP_010544370.1 112 ESLVVPN-RMGRLDFQEIPKPPPVNRLPEKRPRVPSAYNRFMKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHIH 188 7777777.779999************************************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-63	21	189	IPR006780	YABBY protein
SuperFamily	SSF47095	4.71E-8	136	182	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.2E-5	138	183	IPR009071	High mobility group box domain
CDD	cd01390	1.14E-6	140	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010154	Biological Process	fruit development
GO:0010158	Biological Process	abaxial cell fate specification
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MPNVSISSSS APAYPTDHFA SSDQLCYVHC HFCDTFLAVS VPSSSLLKTV MVRCGHCANL 60 LSVNMRALFL PPVSNQLHLP HSFFTPPPPH LLEEMRNGTP NSSVVMAHDP NESLVVPNRM 120 GRLDFQEIPK PPPVNRLPEK RPRVPSAYNR FMKEEIQRIK AGNPDISHRE AFSAAAKNWA 180 HFPHIHIHLG LMPDHPPMKA NVRQQEGENA VVRREGFYG

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269\|PubMed:10457020, ECO:0000269\|PubMed:12417699, ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544370.1	1e-161	PREDICTED: axial regulator YABBY 3
Swissprot	Q9XFB1	3e-89	YAB3_ARATH; Axial regulator YABBY 3
TrEMBL	A0A1J3CNM2	3e-91	A0A1J3CNM2_NOCCA; Axial regulator YABBY 3
TrEMBL	A0A1J3JSA7	3e-91	A0A1J3JSA7_NOCCA; Axial regulator YABBY 3
STRING	XP_010544370.1	1e-161	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2217	28	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	1e-91	YABBY family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yadav RK, et al. Plant stem cell maintenance involves direct transcriptional repression of differentiation program. Mol. Syst. Biol., 2013. 9: p. 654 [PMID:23549482]