PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544533.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 261aa    MW: 29479.2 Da    PI: 10.1887
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544533.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.64.3e-31128182155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt++LH++F+++veqLGG+ekAtPk+il++m+ +gL++ hvkSHLQkYR+
  XP_010544533.1 128 KTRIKWTQDLHKQFIHCVEQLGGAEKATPKAILKMMNTDGLSILHVKSHLQKYRI 182
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.277125185IPR017930Myb domain
SuperFamilySSF466893.58E-16126182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-26127182IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-23128182IPR006447Myb domain, plants
PfamPF002496.5E-10132181IPR001005SANT/Myb domain
PfamPF143792.1E-11213257IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNKEGLSNSE AFFSRMGTCD PFASTTSSSS SSAPRCSKGD TDDLSIIVSS QTNMFRNSNI  60
AGSIPCQDRS RSVPLGQDNV IIPHRSKTSQ NNRCEYVRIH HSSDNNGSVV KNEVTAQSSQ  120
PKASPTSKTR IKWTQDLHKQ FIHCVEQLGG AEKATPKAIL KMMNTDGLSI LHVKSHLQKY  180
RIGRHIPESL QERSSKKRDA DSIAWFGSKV GLQLMEALNQ QLDVQRSLSK QLEVQRDLQE  240
RIEEEWKKLR QMLDRQLQRQ K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-18128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-18128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-18128185158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-18128185158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-18128185158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-18128185158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-18128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-18128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-18128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-18128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-18128185259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-18128185259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544533.10.0PREDICTED: myb family transcription factor PHL5-like
SwissprotQ0WVU33e-47PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A2C9VDJ51e-48A0A2C9VDJ5_MANES; Uncharacterized protein
STRINGXP_010544533.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.18e-46G2-like family protein