PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544534.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 554aa MW: 61661.1 Da PI: 5.3028

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334.5	1.9e-102	166	547	1	373
GRAS 1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfsevsP 89 lv+lL+++Aea++ + +el++ +Larl+el+sp + ++m+Rla++ft +L++ l r ++++ + + + + +++++++aa++lf+++sP XP_010544534.1 166 LVHLLMAAAEALTGahKTQELTRVILARLKELVSPGDrTNMERLAFHFTDGLSSLLERATNTVKRRQgggSHLHREVRDHVDVVAAFQLFQDMSP 260 68********973355669**********9989***************7777776654323333333449999******** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 +++f++ltaNqaIleav e+r+Hi+D+di++G+QW +++qaL +R++gpp +lR+T+++++ +g s +++e g+rLa+fAe++g pf+f+ XP_010544534.1 261 YVNFGYLTANQAILEAVGYERRIHIVDYDIMEGVQWSSFMQALVTRKAGPPvqHLRVTALSQAINGrkSVAAVQEAGRRLASFAESVGQPFSFHH 355 *******************************************999999*****988899999******************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleak 274 ++ e+++ ++L++ +gEal++n++l+l r+ ++ ++ ++L+ k+l+Pk+v++v++e+ + ++ F +rf++ l+ +sa+fdslea+ XP_010544534.1 356 CKLDSDETFNSSSLKLVRGEALVINCMLHLPRFSYQTPNS---LVSFLSETKTLNPKLVTLVHEEVGMsVDQGFTTRFMDLLHQFSAIFDSLEAG 447 9999*************************8555544...458***************999899******************** PP GRAS 275 lpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367 +p ++ +r +vEr++lg++i+ +++ a+ + + e++ +W+++le+ GF+pv +s ++ +qaklll+ ++ dgy+vee ++ +vlgWk+r+L XP_010544534.1 448 FPVANPARGFVERAFLGPWISAWLTRIAAAtENSEVESFLSWSRWLETNGFNPVDVSFTNCCQAKLLLSLFS-DGYKVEELgRNGIVLGWKSRRL 541 ********************9887764678899*******************************.**99577788**** PP GRAS 368 vsvSaW 373 vs+S+W XP_010544534.1 542 VSASFW 547 **** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.306	140	528	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.6E-100	166	547	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MEPVISCVAL HGFYSCVPIL LLYIYTLHCR YHLLTLQVQH CPPVAMAFPD DDFLDLLFSD 60 HTAVPATAAS AIAASTTTTT ISSGEEQGNN WNDWSPVMDW SSDFRDLIDS IMADEATIMD 120 PSPRLLAYDH DQEVCNSTST DSMMMMVTDA VDLEDPKPDD LKGLRLVHLL MAAAEALTGA 180 HKTQELTRVI LARLKELVSP GDRTNMERLA FHFTDGLSSL LERATNTVKR RQGGGSHLHR 240 EVRDHVDVVA AFQLFQDMSP YVNFGYLTAN QAILEAVGYE RRIHIVDYDI MEGVQWSSFM 300 QALVTRKAGP PVQHLRVTAL SQAINGRKSV AAVQEAGRRL ASFAESVGQP FSFHHCKLDS 360 DETFNSSSLK LVRGEALVIN CMLHLPRFSY QTPNSLVSFL SETKTLNPKL VTLVHEEVGM 420 SVDQGFTTRF MDLLHQFSAI FDSLEAGFPV ANPARGFVER AFLGPWISAW LTRIAAATEN 480 SEVESFLSWS RWLETNGFNP VDVSFTNCCQ AKLLLSLFSD GYKVEELGRN GIVLGWKSRR 540 LVSASFWASP EPNL

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MEPVISCVAL HGFYSCVPIL LLYIYTLHCR YHLLTLQVQH CPPVAMAFPD DDFLDLLFSD  60
HTAVPATAAS AIAASTTTTT ISSGEEQGNN WNDWSPVMDW SSDFRDLIDS IMADEATIMD  120
PSPRLLAYDH DQEVCNSTST DSMMMMVTDA VDLEDPKPDD LKGLRLVHLL MAAAEALTGA  180
HKTQELTRVI LARLKELVSP GDRTNMERLA FHFTDGLSSL LERATNTVKR RQGGGSHLHR  240
EVRDHVDVVA AFQLFQDMSP YVNFGYLTAN QAILEAVGYE RRIHIVDYDI MEGVQWSSFM  300
QALVTRKAGP PVQHLRVTAL SQAINGRKSV AAVQEAGRRL ASFAESVGQP FSFHHCKLDS  360
DETFNSSSLK LVRGEALVIN CMLHLPRFSY QTPNSLVSFL SETKTLNPKL VTLVHEEVGM  420
SVDQGFTTRF MDLLHQFSAI FDSLEAGFPV ANPARGFVER AFLGPWISAW LTRIAAATEN  480
SEVESFLSWS RWLETNGFNP VDVSFTNCCQ AKLLLSLFSD GYKVEELGRN GIVLGWKSRR  540
LVSASFWASP EPNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-44	157	547	10	378	Protein SCARECROW
5b3h_A	6e-44	157	547	9	377	Protein SCARECROW
5b3h_D	6e-44	157	547	9	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544534.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544534.1	0.0	PREDICTED: scarecrow-like protein 26 isoform X1
Refseq	XP_010544542.1	0.0	PREDICTED: scarecrow-like protein 26 isoform X2
Swissprot	Q9SUF5	0.0	SCL26_ARATH; Scarecrow-like protein 26
TrEMBL	A0A178UYV9	0.0	A0A178UYV9_ARATH; Uncharacterized protein
STRING	XP_010544534.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9914	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	0.0	GRAS family protein