PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544607.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 267aa    MW: 29096.4 Da    PI: 8.7735
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544607.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18183217135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_010544607.1 183 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 217
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-793265IPR016679Transcription factor, GATA, plant
SMARTSM004012.6E-16177227IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.61E-13179234No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13181215IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.227181213IPR000679Zinc finger, GATA-type
CDDcd002025.71E-14182235No hitNo description
PfamPF003207.5E-16183217IPR000679Zinc finger, GATA-type
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRDMDVYGLS SPELIRIDDL LDFSNVNDDI FSSASSSTAA ASSASSSSFH LPQNSFPSSS  60
SSSPFLTDFT HDLCVPSDDA AQLEWLSQFV DDSFSDFPEN PLGGTMINVR PDTSFTGRPR  120
SKRSRAPAAT PAGTWSPMPD PDGHAAAGRA KPKKEGGGRH KEGGGRHVAA ARGVTAEGGV  180
RRCTHCASEK TPQWRTGPLG PKTLCNACGV RFKSGRLVPE YRPAASPTFL HSHRKVMELR  240
RQKELIRQQQ QLQLHQQLQQ QPPFQPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156164GGRHKEGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544607.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893194e-39AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544607.10.0PREDICTED: GATA transcription factor 2-like
SwissprotO497415e-96GATA2_ARATH; GATA transcription factor 2
TrEMBLV4LH941e-103V4LH94_EUTSA; GATA transcription factor
STRINGXP_010544607.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-76GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]