PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544612.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 232aa    MW: 25069 Da    PI: 7.1756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1854104155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  XP_010544612.1  54 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 104
                     59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.55E-1954113No hitNo description
SMARTSM003801.3E-3555118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3055113IPR001471AP2/ERF domain
PfamPF008472.0E-1155104IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1955112IPR016177DNA-binding domain
PROSITE profilePS5103221.83855112IPR001471AP2/ERF domain
PRINTSPR003675.5E-95667IPR001471AP2/ERF domain
PRINTSPR003675.5E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MELGSRCLSM VKKAQQETAK RVSSPSSSSS SSLCSSPSPS LSSSSSSSMC KNKKKYKGVR  60
MRSWGSWVSE IRAPNQKTRI WLGSYSTAEA AARAYDAALL CLKGSSANLN FPEISSSLCI  120
PSTNHENTVM SPKSIQRVAA AAAANSSIIP ASPMASSSSS SPADDQYDVV SMTHSLGTYN  180
EQTNESWWYN NCFDGIESPD QFMLFNGVSP FLTPTIDDFL EEGGDIRLWS FC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1554112160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-14551131473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544612.11e-169PREDICTED: ethylene-responsive transcription factor ERF014-like
SwissprotQ9LPE81e-51ERF14_ARATH; Ethylene-responsive transcription factor ERF014
TrEMBLA0A1J3G5981e-53A0A1J3G598_NOCCA; Uncharacterized protein (Fragment)
STRINGXP_010544612.11e-169(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.12e-49ERF family protein
Publications ? help Back to Top
  1. Zhang H,Hong Y,Huang L,Li D,Song F
    Arabidopsis AtERF014 acts as a dual regulator that differentially modulates immunity against Pseudomonas syringae pv. tomato and Botrytis cinerea.
    Sci Rep, 2016. 6: p. 30251
    [PMID:27445230]