PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544844.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 560aa    MW: 61924.4 Da    PI: 6.2106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.9e-13391437455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+r+N++f  Lr+++P+      +K++Ka+ L  A+ +I++Lq
  XP_010544844.1 391 NHVEAERKRRERLNQRFYALRSVVPNI-----TKMDKASLLGDAIAHINELQ 437
                     799***********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-5446234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.933387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-15390441No hitNo description
SuperFamilySSF474594.84E-18390450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17391447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10391437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-17393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGALGWDDEE KAMVTAVLGH RAYDYLRASS VSNENLCATV GSDKGLQNKL SDLVERPNSM  60
SFSWNYAILW QLSRSRSGHL VLGWGDGSCR EASKEEEPKL IRYGNCGLEE ETWQNMRKRV  120
LQKLHRFSGG LDEDNYAVKM DRVTDMEMFF LVSMYFSFPN GEGGPGRCFA SGKHFWISDA  180
MNTESSYCFR SFLAKSAGIQ TIVMVPMDVG VVELGSVRSL PESMELVHSV KALFSTRAHQ  240
TATFFPHDNN VSVSGNKTGG VHRLFGQELR NWNDVRANPP QGWEAYQSPM NGFQGLAPAY  300
SAQTTENNMQ DYGNATIEAA PLNNHQSPKQ TNQIQIDFGL SAASSKPSAN AISETMDSCP  360
EKGAGFATDF DEKRPRKRGR KPANGREEPL NHVEAERKRR ERLNQRFYAL RSVVPNITKM  420
DKASLLGDAI AHINELQEKV KAMEAERTGT GGREPNPVLE SSSFSPDVEV RNLNDEVVVK  480
VSSPLDSHPV SRIIQAIGNS QVSVLDCKLS LINDTVFHTF VIKSNGSEAM TREKLMAAVY  540
PDIDSDEPLP SSGSQVSGCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27385447264Transcription factor MYC2
5gnj_B2e-27385447264Transcription factor MYC2
5gnj_E2e-27385447264Transcription factor MYC2
5gnj_F2e-27385447264Transcription factor MYC2
5gnj_G2e-27385447264Transcription factor MYC2
5gnj_I2e-27385447264Transcription factor MYC2
5gnj_M2e-27385447264Transcription factor MYC2
5gnj_N2e-27385447264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372380KRPRKRGRK
2395400ERKRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544844.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544844.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A178VP130.0A0A178VP13_ARATH; JAM1
TrEMBLD7LEK30.0D7LEK3_ARALL; Basic helix-loop-helix family protein
STRINGXP_010544844.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]