PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544882.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 365aa    MW: 41642.9 Da    PI: 10.0269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544882.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13196247155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr l+P++   + ++ + a+i   A++++k L+
  XP_010544882.1 196 QRMTHIAVERNRRRQMNDHLNSLRILIPPS---YVQRGDQASIIGGAIDFVKALE 247
                     79****************************...9*****************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15194262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.20E-11194250No hitNo description
Gene3DG3DSA:4.10.280.102.8E-12195249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-9201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEKLQGHINP SSLHRQVDVG SLEVHGFAEA QSFGLEDEEE RKVQQISAPG LQETIPLLQM  60
LQNGEPSPFL SFKEPNFLAL LSLQTLKKPW ELENNTHEVP DFHSSIHSET SSFHQNPASV  120
SCMEEFHPAI SNQELPFNPL ENLLSSANTL PSSSSPCTGN WRSKRKNSHL PPSMSRERRK  180
RKRTKPTKNI EDIENQRMTH IAVERNRRRQ MNDHLNSLRI LIPPSYVQRG DQASIIGGAI  240
DFVKALEQLL LSLEAQKRTQ KNGGEGETMD ANLASNHVRG ISSNEWCMSN EDQASSPKIE  300
ATVIQNHVNL KVQCPKKQEK RNPSFKIITE WIRSFGRWKR TASWGRPTRY RRRCIRFSTK  360
STAQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163182KRKNSHLPPSMSRERRKRKR
2177182RRKRKR
3178185RKRKRTKP
4196207RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544882.10.0PREDICTED: transcription factor bHLH67-like isoform X2
SwissprotQ700E41e-100BH067_ARATH; Transcription factor bHLH67
TrEMBLD7LSR11e-106D7LSR1_ARALL; Basic helix-loop-helix family protein
STRINGXP_010544881.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.14e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]