PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544923.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 431aa MW: 48114.8 Da PI: 7.3086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.7	3.7e-07	253	296	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er R++i++++ Lr llP++ + K K++ L +A+eY ++Lq XP_010544923.1 253 AEREQRHEIKKRMIALRNLLPNN----CNKDKKSSLLDEAIEYTRKLQ 296 7999****************7....689***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-10	242	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-10	242	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.67E-8	243	300	No hit	No description
PROSITE profile	PS50888	11.884	245	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-5	252	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-4	253	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MEEDPFAPLS NFISKRLEEH EYMELVWENG QILTRGRRSN VYSTRNPPST TSLFLDLHEA 60 DKNLGDTQVV PVGENTREET DKSTKEKIKL SVAAHNKKVA IHVEPKTEVG LPAHKILVKE 120 RDGGRVESTV HSLKAMADQT NHKELEFSPP DAQSVAMGRY NRYREKVGSV KEENESSDSL 180 GWSTQLCSSS FSICSRGTSQ DPIISSPRRT SAESEGSIHL STNTDVESED EGPQVPARKT 240 TKRKQSRDFD DLAEREQRHE IKKRMIALRN LLPNNCNKDK KSSLLDEAIE YTRKLQLQIQ 300 FRLMSMANGF AAPQMMYYSP LVHYSPLGLG FGTPPFVSSP VPGPALPNQP GPVPFSSFSF 360 YPIEPSSQQC FRPAASSTQF QRSDSVSSLD NSQKQSSSGE WTIPTSIRSR ANIQNMLMTK 420 QGNECSWGGA V

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MEEDPFAPLS NFISKRLEEH EYMELVWENG QILTRGRRSN VYSTRNPPST TSLFLDLHEA  60
DKNLGDTQVV PVGENTREET DKSTKEKIKL SVAAHNKKVA IHVEPKTEVG LPAHKILVKE  120
RDGGRVESTV HSLKAMADQT NHKELEFSPP DAQSVAMGRY NRYREKVGSV KEENESSDSL  180
GWSTQLCSSS FSICSRGTSQ DPIISSPRRT SAESEGSIHL STNTDVESED EGPQVPARKT  240
TKRKQSRDFD DLAEREQRHE IKKRMIALRN LLPNNCNKDK KSSLLDEAIE YTRKLQLQIQ  300
FRLMSMANGF AAPQMMYYSP LVHYSPLGLG FGTPPFVSSP VPGPALPNQP GPVPFSSFSF  360
YPIEPSSQQC FRPAASSTQF QRSDSVSSLD NSQKQSSSGE WTIPTSIRSR ANIQNMLMTK  420
QGNECSWGGA V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	244	RKTTKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544923.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544923.1	0.0	PREDICTED: transcription factor PIL1 isoform X2
STRING	XP_010544921.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46970.1	1e-46	phytochrome interacting factor 3-like 1