PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545038.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 463aa    MW: 49591.9 Da    PI: 8.6761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-114569327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     + C +++rtG+C yG+rC+++H++
  XP_010545038.1 45 APDCAYYMRTGICGYGSRCRYNHPR 69
                    589********************96 PP
2zf-CCCH40.54.6e-1390114327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tGtCk+G++CkF+H++
  XP_010545038.1  90 EPPCQFYLKTGTCKFGASCKFHHPK 114
                     79*********************96 PP
3zf-CCCH36.11.1e-11137160427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C+++++tG+Ck+G +CkF+H++
  XP_010545038.1 137 KECSHYLKTGQCKFGVTCKFHHPQ 160
                     68********************97 PP
4zf-CCCH35.51.7e-11288312125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +++++C++++rtG Ck+G +CkF+H
  XP_010545038.1 288 PGEPECQYYLRTGDCKFGLSCKFHH 312
                     5799********************* PP
5zf-CCCH35.41.9e-11335360227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +  +C f++++G+C++G++CkF H++
  XP_010545038.1 335 GVQPCTFYLQNGFCRFGSTCKFDHPM 360
                     6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-64269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1174270IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-94569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-64770IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-54869IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.09887115IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-687114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-690115IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-1090114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-592113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23133161IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4135160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6136161IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9137160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911287315IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5287314IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9289312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5291316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4293315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347333361IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6335364IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9335360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-6337364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDVYGRSQAM SGAQSGQAPE WSSEGADTGL EGLSSSETYP ERPGAPDCAY YMRTGICGYG  60
SRCRYNHPRD RAVVEAAVRA TGEYPERVGE PPCQFYLKTG TCKFGASCKF HHPKNAGGSM  120
SQVPLNIHGY PLREAEKECS HYLKTGQCKF GVTCKFHHPQ PAGTTTPAST PRFYPSVQSP  180
IPDQYSGPSS SLRVARPPLL PGSYMQGAYG PMLLTPGVVP IPGWNPYSGP VSPVLSPGAQ  240
HAVGATSLYG VTQLSSSTPS LAGAYPSLSS STAPSVGSQK EQIFPERPGE PECQYYLRTG  300
DCKFGLSCKF HHRRDRIPQR ANCILSPIGL PLRPGVQPCT FYLQNGFCRF GSTCKFDHPM  360
GTLRYNPSAS SLVDAPVAPY PMGSLLLGAL PPSSSSSELT ISTSQKDAYL TGLSPSSSIS  420
AGLIFSQSGP LPFPDLQLSS HTVTPPLSSS RITRQGREIR RSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545038.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X2
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGXP_010545037.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein