PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545102.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 304aa    MW: 35309.9 Da    PI: 6.5272
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.7e-36171082102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e++ed+ +++++sw++ g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F  g+++ll++
  XP_010545102.1  17 FLTKTFEMVEDPGTDHIVSWNRGGTSFVVWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEAFLVGQRQLLKN 102
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+k+
  XP_010545102.1 103 IKRRKT 108
                     ****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-6213106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.3E-3613106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-3913106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-201740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-3217106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-205567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVPQPMEGLN EMGPPPFLTK TFEMVEDPGT DHIVSWNRGG TSFVVWDPHS FSTNLLPRYF  60
KHNNFSSFVR QLNTYGFRKI DPDRWEFANE AFLVGQRQLL KNIKRRKTPP SSSPSLLMGE  120
QQEPCIEVGG FGATEGREMQ RLQRDRHVLI AEVVKLRQQQ QRTRAYLQAM EERLQGAEKK  180
QRQMMSFLAR AMQNPSFLNQ LLQQRDKRRE LEEAACKKRR RPIEQGHSVK AEPLEVSELE  240
ALALEMQGFG RRHDRELDHG FWEELLSNER FEGELQIPGG DDDEDEEHVN VLADRFGYLG  300
SSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-261511118125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105LKNIKRR
2206220KRRELEEAACKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545102.10.0PREDICTED: heat stress transcription factor A-7a isoform X2
SwissprotQ9SV121e-109HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A1R3I4V31e-149A0A1R3I4V3_COCAP; Heat shock factor (HSF)-type, DNA-binding protein
STRINGXP_010545101.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-101heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]