PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545170.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 213aa    MW: 23960.2 Da    PI: 8.3049
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.4e-2945103259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC++  gC++kk++er+++d ++++itY+++Hnh+
  XP_010545170.1  45 SDLWSWRKYGQKPIKGSPYPRGYYRCSTCkGCSAKKQIERCRTDASLLIITYSNTHNHP 103
                     699***********************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.44839105IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-3039103IPR003657WRKY domain
SuperFamilySSF1182903.14E-2541103IPR003657WRKY domain
SMARTSM007745.1E-3344104IPR003657WRKY domain
PfamPF031064.3E-2446103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MFLVSQAIVE YMRTSKKTAE KKKTVVTVKI GEKAESLFKN EGLPSDLWSW RKYGQKPIKG  60
SPYPRGYYRC STCKGCSAKK QIERCRTDAS LLIITYSNTH NHPDQGSNPI AQIPLHHPRK  120
EQNLYKPIIF PARESENDGS ADTESMMFGD VLKTGRFPVA REPIGSDPTS RPVVGAEKEN  180
DFFDELDELP MSSGFTRLAQ NDAVFNEEIP VPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-20461031877Disease resistance protein RRS1
5w3x_D4e-20461031877Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545170.11e-160PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A0D2U2T51e-51A0A0D2U2T5_GOSRA; Uncharacterized protein
STRINGXP_010545170.11e-160(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153711117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-33WRKY DNA-binding protein 35