PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545211.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 30811.3 Da    PI: 7.2564
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRrng++KKA ELS+LCdaevaviifsstgk+ye+ss
  XP_010545211.1  9 KRIENVNSRQVTFSKRRNGLMKKARELSILCDAEVAVIIFSSTGKVYEFSS 59
                    79***********************************************96 PP
2K-box56.71.1e-19991831498
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        ++q+++ Lk e+e L  +  +++G++L+ Ls+ eL +Le+qL+++l +i+++K+++ll+qie+++ +ek++ een++Lr++l
  XP_010545211.1  99 DDASRQNSDFLKTELERLHLSYERMKGKELNGLSFPELLSLENQLNEALLSIKDQKTQVLLDQIERSRFQEKRALEENEKLRQQL 183
                     55678999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.955161IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-33287IPR002100Transcription factor, MADS-box
CDDcd002652.09E-42276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014868.2E-1798183IPR002487Transcription factor, K-box
PROSITE profilePS5129712.35499189IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRGRIEIKR IENVNSRQVT FSKRRNGLMK KARELSILCD AEVAVIIFSS TGKVYEFSSS  60
SMQQTLSRYG YSSSTSDHIH QREILQHQRP HHCPLQDNDD ASRQNSDFLK TELERLHLSY  120
ERMKGKELNG LSFPELLSLE NQLNEALLSI KDQKTQVLLD QIERSRFQEK RALEENEKLR  180
QQLVKSGRSS SGPSELTPVN AVSRMLAEFP DMTRRTGGES SSSDDDDNDS GDRHSDTFLH  240
LGLSSEYNRK RKTPKIESVC ETSWSQAASD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21169169MEF2C
5f28_B3e-21169169MEF2C
5f28_C3e-21169169MEF2C
5f28_D3e-21169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545211.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545211.10.0PREDICTED: agamous-like MADS-box protein AGL18 isoform X2
SwissprotQ9M2K82e-95AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A087GYM21e-103A0A087GYM2_ARAAL; Uncharacterized protein
STRINGXP_010545163.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.14e-93AGAMOUS-like 18