PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545268.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 576aa    MW: 62871.4 Da    PI: 7.3222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55.1e-32222279260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  XP_010545268.1 222 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 279
                     8****************************************.***************85 PP
2WRKY106.81.1e-33393451159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_010545268.1 393 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 451
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.766216280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-27218280IPR003657WRKY domain
SuperFamilySSF1182906.02E-25220280IPR003657WRKY domain
SMARTSM007743.2E-34221279IPR003657WRKY domain
PfamPF031061.3E-24222278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37378453IPR003657WRKY domain
SuperFamilySSF1182902.48E-29385453IPR003657WRKY domain
PROSITE profilePS5081138.825388453IPR003657WRKY domain
SMARTSM007747.7E-39393452IPR003657WRKY domain
PfamPF031064.2E-26394451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MKADKKAVLR SDVFSMEPGN FAGEEFRPAA GDPVKRQGAA YSASGGGARY KLMSPAKLPI  60
SRSTCITIPP GLSPTTFLES PVLLSNIKAE PSPTTGSLFK PQPVHGSISS SCYPGSAVRL  120
NAFDEKKSSE FEFRPDPVSN MVSAELDKQR IEPPVQFQGH CLSHAPSLTS GAVASSSELS  180
RPTHPLQTTP AGSDIPAVSD VDESNQTSQN DQKGNAPQIL ADDGYNWRKY GQKHVKGSEF  240
PRSYYKCTHP NCEVKKLFER SHDGQITEIV YKGTHDHPKP QPSRRNSGGL LMSAQEERLD  300
KFSSLTGRDE KGSSMCNNMS QPFEQNGNPE VSPVSASEEG GEIATSRNND DLDGDDPFSK  360
RRRIDDCMEI TPLVKPIREP RVVVQTLSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT  420
AAGCPVRKHV ERASHDPKAV ITTYEGKHNH DVPTARSNNN NNNNHHHDIS AGPPRFRPEE  480
LDTISLDLGV GMASGSGPPD HTSSANEHQT RQLNSGAGFR FVHATPVNSY YAALNGNANQ  540
YGQRETTSEA QTGENSALNH SPYTYAQSIG RIQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36220453877Probable WRKY transcription factor 4
2lex_A1e-36220453877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545268.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLD7MF750.0D7MF75_ARALL; WRKY DNA-binding protein 20
STRINGXP_010545268.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein