PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545361.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 602aa    MW: 65399.1 Da    PI: 6.8179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-06326346525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C++f   G+C++Gd+C F+H
  XP_010545361.1 326 PCNNFTTKGFCHRGDNCLFSH 346
                     7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.577267294IPR000571Zinc finger, CCCH-type
SMARTSM003560.17268293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5268292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549296323IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027296322IPR000571Zinc finger, CCCH-type
SMARTSM003561.1324348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5325348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976326349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001326346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDGRSQKIMD ELELMLNEED DLLPEDCMNL LEILEVSDGS SNMIASLEDN AKEPLDPRIT  60
SEIQGDLEEG NKKMSESFDL PPGKGMAEDG NSSHGFATNV TQMIRDEDIE EGEIFGDVNI  120
NYDDLHLGED EPVERMDEEQ VTDDTIDDGG TNDIYSANRQ NLSSIPSNAV VSLPEVVCEK  180
GRKLDAEVGN LDDHMTDDEK VKSRGSGSHE TSCKDKNSNV GSAKKKRSAR SEKNNSKKKA  240
NFRKRRAEER RLLGVKRLKL KPVVAKPKVI KYCCHYLKGR CQKGENCRYS HDIVPLTKSS  300
PCCYFATQSC MKGEDCPFDH DLSKYPCNNF TTKGFCHRGD NCLFSHKGTP GCALDASKSG  360
TPNASGPSSL NSVSAASFSF GVSPQNTNKP TTTKPPTAFP SRLSSPVSFM KTSSPKTNEH  420
EKAGTPPRKP SVPPKGISFL SLDKTSSGNI PKMPQHEQAS SPSVENILKD ALQKTTSKTT  480
PITGNPLPPA SSSSPPKGIS FLSFGSDRFK GKTLANAPDG QHERQMSSQP STSGQLKATP  540
IFQTQKTLIS ALKLAAELDP GKTKKCTNDP AAVNKLDTDN KGDAAHSRNN SSKILEFLAS  600
LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224245KKRSARSEKNNSKKKANFRKRR
2250258RLLGVKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545361.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545359.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
STRINGXP_010545359.10.0(Tarenaya hassleriana)