PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545390.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 247aa MW: 28164.2 Da PI: 8.0362

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.2	7.8e-17	9	52	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +ri n+ +r +t+ kR++ +lKKA E S+LC++e +++i +++ XP_010545390.1 9 ERIANEKKRVTTYKKRKACLLKKADEFSTLCGVETCLLISGPDR 52 69***************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.189	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-14	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-17	2	84	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.38E-20	2	79	No hit	No description
PRINTS	PR00404	4.6E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-15	10	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGRKMLKMER IANEKKRVTT YKKRKACLLK KADEFSTLCG VETCLLISGP DRTAAEAEPE 60 TWPADKNSVR AIINKYIDTG PNSCRKSCQI HDVLSERSKN MEKKTPPKIK YCTWDEKLRG 120 CSQEELCRIL GNIDENIDKA QRFVSVLEQQ PVVPWSTLGH VGLPFSNPHD QVTVDPVKAL 180 MMLRCCNGYN FFPGICIDQE VQYGSVPIQG PAYFEPHWTQ ENIVFNGTDQ FISNRVNKWE 240 NSGNDQM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545390.1	0.0	PREDICTED: agamous-like MADS-box protein AGL82
STRING	XP_010545390.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-43	M-type_MADS family protein