PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545411.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 163aa    MW: 17885.2 Da    PI: 9.1974
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545411.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.22.2e-2583137159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++ +pr    Ct+++C+vkk+v+r  +dp++v++tYeg Hnh+
  XP_010545411.1  83 LDDGYRWRKYGQKSVKNNVHPR----CTYHTCNVKKQVQRLVKDPSIVVTTYEGIHNHP 137
                     59*******************6....********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-2670137IPR003657WRKY domain
SuperFamilySSF1182901.83E-2277138IPR003657WRKY domain
PROSITE profilePS5081122.26378139IPR003657WRKY domain
SMARTSM007743.9E-3083138IPR003657WRKY domain
PfamPF031064.5E-1984137IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEGGDPMLAL DNPFMSSSPP LLMTASFSGE TAGASSSFSP ENLPDNGGGG GRGEGVKINK  60
GKGKRSAATP RIAFHTRSVD DVLDDGYRWR KYGQKSVKNN VHPRCTYHTC NVKKQVQRLV  120
KDPSIVVTTY EGIHNHPCEK LMETLSPLLR QLQFLSTVSE FHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-1973136774Probable WRKY transcription factor 4
2lex_A1e-1973136774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545411.11e-120PREDICTED: probable WRKY transcription factor 43 isoform X2
SwissprotQ8VWQ43e-64WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLM4EFW25e-66M4EFW2_BRARP; Uncharacterized protein
STRINGXP_010545404.11e-109(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-66WRKY DNA-binding protein 56