PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545431.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 353aa    MW: 38097.3 Da    PI: 6.7627
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071654339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                    +r C+ +++  ++ +C+ ++ +lC +C +  H+g  H++
  XP_010545431.1 16 ARSCDGCHSVAATVYCRVDSAFLCITCDSRVHSGtrHER 54
                    689******99*********************8888876 PP
2zf-B_box21.35.8e-075599341
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     ++C+ +e+ +    C+ +   lC +C + +H+       H++ p
  XP_010545431.1 55 VWVCEVCERAPSAVTCKADAATLCVSCDSDIHSAnplasrHDRLP 99
                    689*****************************6688888888776 PP
3CCT69.87e-24281324144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  XP_010545431.1 281 REARVSRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 324
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-51457IPR000315B-box-type zinc finger
PROSITE profilePS501199.4991457IPR000315B-box-type zinc finger
PfamPF006436.0E-61655IPR000315B-box-type zinc finger
CDDcd000217.73E-81757No hitNo description
PROSITE profilePS5011910.2153100IPR000315B-box-type zinc finger
CDDcd000211.14E-556100No hitNo description
SMARTSM003361.3E-558100IPR000315B-box-type zinc finger
PROSITE profilePS5101716.747281323IPR010402CCT domain
PfamPF062035.2E-18281323IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGFGLANVKR IPGSAARSCD GCHSVAATVY CRVDSAFLCI TCDSRVHSGT RHERVWVCEV  60
CERAPSAVTC KADAATLCVS CDSDIHSANP LASRHDRLPV EPFFDSAAAA SDFSAATCQS  120
HDLEVCSWLI PDEFSEKPGI NIDTTAEMNS SDFVFSDFDG LADFVCPNSF HPPHNSTGAD  180
RVVPVRTKTN LVSAGNNEHC FNIDFCGSKL STFSYATQSI SHRVSTSSHD FGVVPDGSIS  240
LSEISIPLGR NVIAGSTATA GDPNPSILGG TTSQQICGSD REARVSRYRE KRKNRKFEKT  300
IRYASRKAYA ESRPRIKGRF AKRTDADNDN DNDVVLVGHV YGSASQYGVV PSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545431.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-137COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV4KXA91e-154V4KXA9_EUTSA; Uncharacterized protein
STRINGXP_010545431.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-129CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]