PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545471.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 625aa    MW: 68431.8 Da    PI: 6.4089
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like925e-29175228155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W++eLH++Fv av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_010545471.1 175 KPRVVWASELHQKFVAAVTQL-GPDKAVPKKILDLMNVEGLTRENVASHLQKYRL 228
                     79*******************.********************************8 PP
2Response_reg69.51.5e-231010019109
                     HHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  19 ekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        ++ +v++++++++al +l+ek   +Dl+++D+emp+mdG++ll+     e++lp+i+v+ah++ e + + +  Ga d+l+Kp+  +el++
  XP_010545471.1  10 HTYKC-SVTTTKEAKAALGMLREKSnkFDLVITDVEMPDMDGFKLLELVGL-EMDLPVIMVSAHSDYEHVMKGITHGACDYLVKPVGLKELRN 100
                     55678.9**************888888*******************87754.558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004485.0E-151102IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.8371106IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.38E-257108IPR011006CheY-like superfamily
PfamPF000729.6E-208101IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.5E-1299617IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.1E-2910123No hitNo description
CDDcd001561.41E-2214105No hitNo description
SuperFamilySSF466898.24E-19172232IPR009057Homeodomain-like
PROSITE profilePS5129412.53172231IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-30173233IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24175228IPR006447Myb domain, plants
PfamPF002496.5E-7177227IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MFEGIYIYIH TYKCSVTTTK EAKAALGMLR EKSNKFDLVI TDVEMPDMDG FKLLELVGLE  60
MDLPVIMVSA HSDYEHVMKG ITHGACDYLV KPVGLKELRN IWQHVVRKNT NPSTRNIAGP  120
SGQLLPPPST YQVSKKHKDN IDDGSGDADS DSDGETEGGE GSEHDMDDES CTRKKPRVVW  180
ASELHQKFVA AVTQLGPDKA VPKKILDLMN VEGLTRENVA SHLQKYRLYL KKMDEAHQHH  240
NMASTVYGTK DPSFLHMAQL DGIKNFHSLT ATRRLPISTL LSRPHAPTVT RLSSPNGSLI  300
NLQGIASPSF VQPGHYQHIG NSANKSGKHH SPLLSGVQTV ISFQQTSPPL EASQFPGSRC  360
PAYIGDSKIL GDRAFFMDSQ ASFGGSSSTF SNSQMLQAKY HQPLHKILAG NQFSLQGAPS  420
VSGPLNVSFS GFSRCSDGWQ GNIKAPKSPL DPLPLNHSLS RDELLSNNSF RGVAGNDPVD  480
FNPFIFPGGQ MQCQTNLSGN FVQNMNTSDQ QQNWEEQGRE CTHMSNNSFS PANEMVMEMI  540
NAAGSKGLDG SMMSQIDGSG AILNSQPARL EPEMRSNKGC SSENTKSENG FINDHHDSFD  600
DIMNEMMKQD ESMAAGVGLD SFPLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23173233363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545471.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545471.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT71e-179ARR18_ARATH; Two-component response regulator ARR18
TrEMBLD7MPK50.0D7MPK5_ARALL; Two-component response regulator
STRINGXP_010545471.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.11e-175response regulator 18