PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545485.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 249aa    MW: 28451.7 Da    PI: 9.2968
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.31.7e-26831822100
          DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     Ca+C+ +rr+C   C++ap fp +  ++++ ++klFG+s++++++ ++  +e ++++++sl+ e++ara+dPv G +g+++ l++q++  +++l+
  XP_010545485.1  83 CAVCRQQRRRCDVTCPYAPFFPPHCFADYQKARKLFGTSTIMRMMGEVgAPELKRALADSLLAEGRARAEDPVMGGFGIVRMLRWQIQFYQTHLE 177
                     ************************************************66777*****************************************9 PP

          DUF260  96 llkee 100
                     ++++e
  XP_010545485.1 178 QTRRE 182
                     99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.58181183IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-2583180IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTGKQIRDIL QWLLFVNLSR KIQDDILRRL HSIVTGIGNL MFPETLNGKG WMLNQPIRIG  60
IKFNIRPKTV MENQQNTVVR LNCAVCRQQR RRCDVTCPYA PFFPPHCFAD YQKARKLFGT  120
STIMRMMGEV GAPELKRALA DSLLAEGRAR AEDPVMGGFG IVRMLRWQIQ FYQTHLEQTR  180
REIAARKEAN ARERTGMPPE YKGDGLSTDI DLEAGNTELR LFEPSWLEHG PDRTAETAPA  240
DDVSNPQSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-138318312111LOB family transfactor Ramosa2.1
5ly0_B2e-138318312111LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545485.10.0PREDICTED: LOB domain-containing protein 13-like
STRINGXP_010545485.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.11e-24LOB domain-containing protein 9