PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545496.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 246aa    MW: 27396.6 Da    PI: 9.7523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-203182156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++y+GVr ++ +gr++AeIrdp +   + r++lg+f++aeeAa+a++ a+++l+g+
  XP_010545496.1 31 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDTAARRLRGP 82
                    68********.**********743...5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-133181IPR001471AP2/ERF domain
CDDcd000185.73E-323191No hitNo description
Gene3DG3DSA:3.30.730.101.3E-323289IPR001471AP2/ERF domain
SMARTSM003801.5E-383295IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-233291IPR016177DNA-binding domain
PROSITE profilePS5103224.253289IPR001471AP2/ERF domain
PRINTSPR003677.2E-113344IPR001471AP2/ERF domain
PRINTSPR003677.2E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRRGRGSSAV AGATAVVPVA TANHPRSIKE PRYRGVRKRP WGRFAAEIRD PLKKSRVWLG  60
TFDSAEEAAR AYDTAARRLR GPKAKTNFPI DCSRSSPQHL NHNHYQQQQN PNLCSFPFPA  120
NENRIDPFMD HRLYTGNFPE QFPIISRPAS SSMSSTVESF SGPRPPANQT TSVAKPTKRY  180
PRTPPVVPED CHSDCDSSSS VVDDGDDIAS SSRRKLPFQF DLNLPPANGV DFFVVGDDFH  240
CTDLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212990264ATERF1
3gcc_A2e-212990264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545496.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545496.10.0PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_010545497.10.0PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_010545498.10.0PREDICTED: ethylene-responsive transcription factor 3
RefseqXP_010545500.10.0PREDICTED: ethylene-responsive transcription factor 3
SwissprotQ9LDE48e-85ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A1J3DJJ78e-91A0A1J3DJJ7_NOCCA; Ethylene-responsive transcription factor 7
STRINGXP_010545496.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-57ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]