PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545555.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 453aa    MW: 49720.2 Da    PI: 6.909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.2e-063443821154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  XP_010545555.1 344 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 382
                     5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.684333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-11343397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.15E-6343386No hitNo description
Gene3DG3DSA:4.10.280.101.4E-9347390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGDDFSTTGN GNWWKVSSSS SSSPSSSSGI GCGTLGRFGW ERTETVEVNK ERSSSIESGG  60
SVVFHDHHKL HHDPSFDHHH HHHHHLQMIR LGLSSQPAHQ WNQSLLRDDN KAQTSFGAML  120
QENINANANA DVSINATSSY QQESGSSPAS MWRDSAANME FKAQMSDGSG FFLDQSRFSQ  180
NASSSDSTVT CQSFAVENSS NALYSSPNSS NMFQGTFLGS NQPRNQSPFS YSQYGNFGMS  240
SNNNDHMASA SASATATWFL RASPPQKPQS PLSFSNNAPF WNPSDASPNF FPALQTQPIQ  300
TPNFDEKPKK NVPEIPDPKR SGGDQPAAKR SKNETVSPSP TFKVRKEKMG DRIAALQQLV  360
SPFGKTDAAS VLSEAIEYIK FLHQQVTALS SPYIKSGPSL QHPQNRDQSR DREEPEQDLR  420
SRGLCLVPVS STFPITHDTT VDFWTPTFGG SFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545555.10.0PREDICTED: transcription factor bHLH123 isoform X1
RefseqXP_010545556.10.0PREDICTED: transcription factor bHLH123 isoform X1
SwissprotQ8GXT31e-131BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A397ZCD01e-139A0A397ZCD0_BRACM; Uncharacterized protein
STRINGXP_010545555.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-118bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]