PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545557.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 452aa MW: 49592.1 Da PI: 6.7997

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	8.2e-06	343	381	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk L XP_010545557.1 343 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 381 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.684	332	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-11	342	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.13E-6	342	385	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-9	346	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MGDDFSTTGN GNWWKVSSSS SSSPSSSSGI GCGTLGRFGW ERTETVEVNK ERSSSIESGG 60 SVVFHDHHKL HHDPSFDHHH HHHHHLQMIR LGLSSQPAHQ WNQSLLRDDN KAQTSFGAML 120 QENINANANA DVSINATSSY QQESGSSPAS MWRDSAANME FKAQMSDGSG FFLDQSRFSQ 180 NASSSDSTVT CQSFAVENSS NALYSSPNSS NMFQGTFLGS NQPRNQSPFS YSQYGNFGMS 240 SNNNDHMASA SASATATWFL RASPPQKPQS PLSFSNNAPF WNPSDASPNF FPALQTQPIQ 300 TPNFDEKPKN VPEIPDPKRS GGDQPAAKRS KNETVSPSPT FKVRKEKMGD RIAALQQLVS 360 PFGKTDAASV LSEAIEYIKF LHQQVTALSS PYIKSGPSLQ HPQNRDQSRD REEPEQDLRS 420 RGLCLVPVSS TFPITHDTTV DFWTPTFGGS FR

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MGDDFSTTGN GNWWKVSSSS SSSPSSSSGI GCGTLGRFGW ERTETVEVNK ERSSSIESGG  60
SVVFHDHHKL HHDPSFDHHH HHHHHLQMIR LGLSSQPAHQ WNQSLLRDDN KAQTSFGAML  120
QENINANANA DVSINATSSY QQESGSSPAS MWRDSAANME FKAQMSDGSG FFLDQSRFSQ  180
NASSSDSTVT CQSFAVENSS NALYSSPNSS NMFQGTFLGS NQPRNQSPFS YSQYGNFGMS  240
SNNNDHMASA SASATATWFL RASPPQKPQS PLSFSNNAPF WNPSDASPNF FPALQTQPIQ  300
TPNFDEKPKN VPEIPDPKRS GGDQPAAKRS KNETVSPSPT FKVRKEKMGD RIAALQQLVS  360
PFGKTDAASV LSEAIEYIKF LHQQVTALSS PYIKSGPSLQ HPQNRDQSRD REEPEQDLRS  420
RGLCLVPVSS TFPITHDTTV DFWTPTFGGS FR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545557.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545557.1	0.0	PREDICTED: transcription factor bHLH123 isoform X2
Swissprot	Q8GXT3	1e-133	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A397ZCD0	1e-141	A0A397ZCD0_BRACM; Uncharacterized protein
STRING	XP_010545555.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-120	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]