PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545559.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 437aa    MW: 49294.5 Da    PI: 6.5211
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS403.22.6e-123654371374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ecA+a+s++  +  + l++r + ++s +g+p+qRl ay++eAL ar +rs+s++y++l+ +  +    ++ l+++++++e++P+lkf++
  XP_010545559.1  65 LRQLLIECARALSEDRINHFDILIERARWMVSITGEPIQRLGAYLVEALVARKSRSGSSIYESLRFKVPK---GIDLLSYMQILYEICPYLKFGY 156
                     689****************************************************************999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     ++ N aI +a  +eer+HiiDf+i+qG+QW++Ll+aLa+Rp+gpp++RiTg+++p s      e l+++++ La + +++++p+ef+++  +++ 
  XP_010545559.1 157 MAVNGAIADACRNEERIHIIDFQIGQGTQWITLLRALAARPSGPPRVRITGIDDPLSRytrGGEGLKTVERGLAVLSRRFNIPIEFHAIPNQSVL 251
                     ******************************************************999899999*************************9999*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++++e+L ++p+EalaVn+ l+lhr++desv+++++rd +L++vksl+Pk+ +v+eqe+++n+++Fl+rf+e+++yysa+f+s++  l+re +er
  XP_010545559.1 252 NITVETLGLRPDEALAVNFPLHLHRTPDESVDVNNPRDGLLRTVKSLNPKITTVIEQESNTNTTPFLTRFAETMDYYSAMFESIDGILAREGKER 346
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++vE+++l+++ivnv+aceg+er+erhe l+kWr r+++aGF+++pls ++++ +++ll+ ++ + +++ ee+g+l+lgWk+r L+s+SaWr
  XP_010545559.1 347 VNVEEHCLAKDIVNVIACEGRERVERHELLGKWRLRMTMAGFSSYPLSPFVNSVIRSLLSSYSAN-HTLMEEDGALLLGWKQRYLISASAWR 437
                     ***************************************************************66.9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.14339418IPR005202Transcription factor GRAS
PfamPF035148.9E-12165437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTLYRSCDLS QGSPLVQVVE CARDLKDVLL ELEILLMSSE EEDGGNAKPR SQAWIEGNGN  60
FPSNLRQLLI ECARALSEDR INHFDILIER ARWMVSITGE PIQRLGAYLV EALVARKSRS  120
GSSIYESLRF KVPKGIDLLS YMQILYEICP YLKFGYMAVN GAIADACRNE ERIHIIDFQI  180
GQGTQWITLL RALAARPSGP PRVRITGIDD PLSRYTRGGE GLKTVERGLA VLSRRFNIPI  240
EFHAIPNQSV LNITVETLGL RPDEALAVNF PLHLHRTPDE SVDVNNPRDG LLRTVKSLNP  300
KITTVIEQES NTNTTPFLTR FAETMDYYSA MFESIDGILA REGKERVNVE EHCLAKDIVN  360
VIACEGRERV ERHELLGKWR LRMTMAGFSS YPLSPFVNSV IRSLLSSYSA NHTLMEEDGA  420
LLLGWKQRYL ISASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-567143625378Protein SCARECROW
5b3h_A6e-567143624377Protein SCARECROW
5b3h_D6e-567143624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545559.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545560.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLW9RCL60.0W9RCL6_9ROSA; Uncharacterized protein
STRINGXP_010545559.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-163GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]