PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545563.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 401aa    MW: 45248.8 Da    PI: 7.2214
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS403.71.9e-123294011374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ecA+a+s++  +  + l++r + ++s +g+p+qRl ay++eAL ar +rs+s++y++l+ +  +    ++ l+++++++e++P+lkf++
  XP_010545563.1  29 LRQLLIECARALSEDRINHFDILIERARWMVSITGEPIQRLGAYLVEALVARKSRSGSSIYESLRFKVPK---GIDLLSYMQILYEICPYLKFGY 120
                     689****************************************************************999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     ++ N aI +a  +eer+HiiDf+i+qG+QW++Ll+aLa+Rp+gpp++RiTg+++p s      e l+++++ La + +++++p+ef+++  +++ 
  XP_010545563.1 121 MAVNGAIADACRNEERIHIIDFQIGQGTQWITLLRALAARPSGPPRVRITGIDDPLSRytrGGEGLKTVERGLAVLSRRFNIPIEFHAIPNQSVL 215
                     ******************************************************999899999*************************9999*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++++e+L ++p+EalaVn+ l+lhr++desv+++++rd +L++vksl+Pk+ +v+eqe+++n+++Fl+rf+e+++yysa+f+s++  l+re +er
  XP_010545563.1 216 NITVETLGLRPDEALAVNFPLHLHRTPDESVDVNNPRDGLLRTVKSLNPKITTVIEQESNTNTTPFLTRFAETMDYYSAMFESIDGILAREGKER 310
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++vE+++l+++ivnv+aceg+er+erhe l+kWr r+++aGF+++pls ++++ +++ll+ ++ + +++ ee+g+l+lgWk+r L+s+SaWr
  XP_010545563.1 311 VNVEEHCLAKDIVNVIACEGRERVERHELLGKWRLRMTMAGFSSYPLSPFVNSVIRSLLSSYSAN-HTLMEEDGALLLGWKQRYLISASAWR 401
                     ***************************************************************66.9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.1433382IPR005202Transcription factor GRAS
PfamPF035146.5E-12129401IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSSEEEDGGN AKPRSQAWIE GNGNFPSNLR QLLIECARAL SEDRINHFDI LIERARWMVS  60
ITGEPIQRLG AYLVEALVAR KSRSGSSIYE SLRFKVPKGI DLLSYMQILY EICPYLKFGY  120
MAVNGAIADA CRNEERIHII DFQIGQGTQW ITLLRALAAR PSGPPRVRIT GIDDPLSRYT  180
RGGEGLKTVE RGLAVLSRRF NIPIEFHAIP NQSVLNITVE TLGLRPDEAL AVNFPLHLHR  240
TPDESVDVNN PRDGLLRTVK SLNPKITTVI EQESNTNTTP FLTRFAETMD YYSAMFESID  300
GILAREGKER VNVEEHCLAK DIVNVIACEG RERVERHELL GKWRLRMTMA GFSSYPLSPF  360
VNSVIRSLLS SYSANHTLME EDGALLLGWK QRYLISASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-563540025378Protein SCARECROW
5b3h_A2e-563540024377Protein SCARECROW
5b3h_D2e-563540024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545563.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545560.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1
RefseqXP_010545563.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X2
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLF6H2I70.0F6H2I7_VITVI; Uncharacterized protein
STRINGXP_010545559.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-164GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]