PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010545895.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 305aa MW: 33919.1 Da PI: 7.5733

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010545895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.3	1.3e-31	13	92	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ ++++vg+kk Lvfy g+ pkg+ktdW+mheyrl XP_010545895.1 13 KASFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSgGSHKVGVKKALVFYGGKPPKGVKTDWIMHEYRL 92 4455889************************************977889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.678	1	126	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-39	12	127	IPR003441	NAC domain
Pfam	PF02365	5.3E-15	19	92	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
IKFEFWDVGF VAKASFGEHE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILSSGG 60 SHKVGVKKAL VFYGGKPPKG VKTDWIMHEY RLADNKSNNR PPVFDFGNKK NSLRLDDWVL 120 CRIYKKNNTG RHVDNDKDDM IDDMMIFRQI PPSISSGLNV SGRMNFFPAR VSNFGIFSDN 180 VNDVPSSLYE SVISSGNVTD TMNHNSDTNV GLNLASSSSG SKPELPMMTT TVKQCIPPPY 240 WPTAAAEEEE EVAADESPGK CFHGGECSNI SSMLAQAPPL MTQQGMLGEG LYRTSYQLHG 300 LNWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-45	13	131	68	173	NAC domain-containing protein 19
3swm_B	3e-45	13	131	68	173	NAC domain-containing protein 19
3swm_C	3e-45	13	131	68	173	NAC domain-containing protein 19
3swm_D	3e-45	13	131	68	173	NAC domain-containing protein 19
3swp_A	3e-45	13	131	68	173	NAC domain-containing protein 19
3swp_B	3e-45	13	131	68	173	NAC domain-containing protein 19
3swp_C	3e-45	13	131	68	173	NAC domain-containing protein 19
3swp_D	3e-45	13	131	68	173	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010545895.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010545895.2	1e-163	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-123	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A1J3CLH9	1e-121	A0A1J3CLH9_NOCCA; NAC domain-containing protein 18
STRING	XP_010545895.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-115	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]