PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546017.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 184aa    MW: 19027.3 Da    PI: 4.8433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.8e-161867155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa a++ a+++l+g
  XP_010546017.1 18 PVYRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAEMAATAYDVAALALKG 67
                    68****9.55.6*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-101867IPR001471AP2/ERF domain
SMARTSM003803.0E-301981IPR001471AP2/ERF domain
PROSITE profilePS5103220.1391975IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-181977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-271977IPR001471AP2/ERF domain
CDDcd000186.26E-282077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAAAAVSAAD SCVRKRHPVY RGIRCRSGKW VSEIREPKKT TRIWLGTYPT AEMAATAYDV  60
AALALKGGEA VLNFPESATS SPVPGSSSAA DIRIAAAAAA ASAVVKKEEG KSGLASPAAR  120
ESHGGGDQAA GPGTEFVDEE AILNMHNLLA DMAEGMLVPP PWMVSPPSDD SPENSDGGDS  180
LWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1317761273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546017.11e-131PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF027
SwissprotQ9CAN96e-56ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A200R0B29e-65A0A200R0B2_9MAGN; AP2/ERF domain
STRINGXP_010546017.11e-130(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.18e-34ERF family protein