PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546028.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 183aa    MW: 20598.2 Da    PI: 4.9565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-172878155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr++    +Wv+e+r+p+    + +r++lg++ t+e+Aa+a++ a+++l+g
  XP_010546028.1 28 PVYRGVRRRN-GDKWVCEVREPK----HqRRIWLGTYPTPEMAARAHDVAALALRG 78
                    68*****877.9*********83....46*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-132878IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-302988IPR001471AP2/ERF domain
SMARTSM003801.0E-242992IPR001471AP2/ERF domain
PROSITE profilePS5103222.3392986IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-202988IPR016177DNA-binding domain
CDDcd000184.11E-283088No hitNo description
PRINTSPR003672.2E-73041IPR001471AP2/ERF domain
PRINTSPR003672.2E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRNDEFVLAE MLPKKRAGRK VFKETRHPVY RGVRRRNGDK WVCEVREPKH QRRIWLGTYP  60
TPEMAARAHD VAALALRGRS ACLNFADSAW CLPSPDSDDP DVIRSAAAAA AEMFRTPEVG  120
SEITVLPSDG GGSAEEEEMT MMSRIAEEPL MSPPRPMYYY GDVGSCVYVD DDSSYDDVSL  180
WSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-141685371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546028.11e-133PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9SGJ62e-86DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A078IEC95e-87A0A078IEC9_BRANA; BnaA09g10730D protein
TrEMBLA0A397XY935e-87A0A397XY93_BRACM; Uncharacterized protein
TrEMBLM4EFQ05e-87M4EFQ0_BRARP; Uncharacterized protein
STRINGXP_010546028.11e-133(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.26e-66ERF family protein