PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546046.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 273aa MW: 29693 Da PI: 5.2918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.6e-11	158	204	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_010546046.1 158 HSLAERARREKISERMKVLQDLIPGC----NKIIGKALVLDEIINYIQSLQ 204 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-17	151	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.40E-10	151	208	No hit	No description
PROSITE profile	PS50888	15.605	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-17	154	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-8	158	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-10	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDPPLVNESS FSAANPSSYT LSEIWPFPAN DSLRSGLRLS VNSDGLAEFS GNKGISAEES 60 TVTEHSGGCG GRKRKDLSCE DESSKMVSSS SRGNRLNELS EKKRKISGSE SENGDDARPE 120 GETSSGGGSK AMEQKGKPEP PKDYIHVRAR RGQATDRHSL AERARREKIS ERMKVLQDLI 180 PGCNKIIGKA LVLDEIINYI QSLQRQVEFL SMKLEVVNSG MGVGPTVGVF PSGGIGAHPL 240 DVQRTVFDQR EAEEGRGPQP EWLQMQADDG NFE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546046.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546046.1	0.0	PREDICTED: transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	1e-134	BH079_ARATH; Transcription factor bHLH79
TrEMBL	V4KKD6	1e-139	V4KKD6_EUTSA; Uncharacterized protein
STRING	XP_010546046.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-133	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]