PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546076.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 24139.9 Da    PI: 9.7842
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546076.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvtfskRrng+lKKA+ELSvLCdaev+ iifs++g+l+e+ss
  XP_010546076.1  9 KKIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVSAIIFSQKGRLFEFSS 59
                    68***********************************************96 PP
2K-box70.65e-2481171798
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        +e+  ++l+qe + + ++ie L+ ++R+llG+++ s+s++eL++L +q+++sl +iR++K +l+ eq+e+l++kek+l een++L +k+
  XP_010546076.1  81 P-DTENCVQRLKQETTSMMRKIELLELQKRKLLGQGIASCSINELHELDNQIQRSLINIRARKAQLFNEQMEKLKEKEKMLLEENTKLCQKY 171
                     3.577789********************************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.539161IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.07E-42378No hitNo description
PRINTSPR004043.1E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-32380IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-2484171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.72387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MVRGKIEMKK IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVSAIIFSQ KGRLFEFSSS  60
DTEKTIERYR KCTDYHQISK PDTENCVQRL KQETTSMMRK IELLELQKRK LLGQGIASCS  120
INELHELDNQ IQRSLINIRA RKAQLFNEQM EKLKEKEKML LEENTKLCQK YGKNSWEARV  180
QRDDSLVTTR SSEVKTDLII GLPERCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-19184183Myocyte-specific enhancer factor 2B
1tqe_Q1e-19184183Myocyte-specific enhancer factor 2B
1tqe_R1e-19184183Myocyte-specific enhancer factor 2B
1tqe_S1e-19184183Myocyte-specific enhancer factor 2B
6c9l_A1e-19184183Myocyte-specific enhancer factor 2B
6c9l_B1e-19184183Myocyte-specific enhancer factor 2B
6c9l_C1e-19184183Myocyte-specific enhancer factor 2B
6c9l_D1e-19184183Myocyte-specific enhancer factor 2B
6c9l_E1e-19184183Myocyte-specific enhancer factor 2B
6c9l_F1e-19184183Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546076.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546077.11e-150PREDICTED: MADS-box protein AGL42-like
RefseqXP_010546078.11e-150PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS17e-91AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0D3AYB03e-88A0A0D3AYB0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DIR33e-88A0A3P6DIR3_BRAOL; Uncharacterized protein
STRINGXP_010546076.11e-150(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.34e-84AGAMOUS-like 42