PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546131.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 355aa    MW: 39869.5 Da    PI: 8.3939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-19186236255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+++++ eAa+a++ a+ +l+g
  XP_010546131.1 186 HYRGVRRRP-WGKYAAEIRDP---NrKGARIWLGTYDSPVEAARAYDVAAFRLRG 236
                     8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-31185244No hitNo description
Gene3DG3DSA:3.30.730.104.7E-31185245IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-23186246IPR016177DNA-binding domain
SMARTSM003802.6E-36186250IPR001471AP2/ERF domain
PfamPF008471.4E-13186236IPR001471AP2/ERF domain
PROSITE profilePS5103225.04186244IPR001471AP2/ERF domain
PRINTSPR003673.3E-13187198IPR001471AP2/ERF domain
PRINTSPR003673.3E-13226246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MRRNLHRQNK SKSPTTIKKQ DASRSDPRTS PELSNVYSRS FDLYKPSFLH SLFSTSTHTH  60
KYIYTHTRIY NRERDLELIS SELQMENNEE ALALELVRQH LLTDSTSMET GFISNFSISR  120
VVSTTIETNP SLFFNQVQNF HMETSPKTLQ PQNPKPSSTL NQRKPPLPDI SVPRTGNGAE  180
GEDKKHYRGV RRRPWGKYAA EIRDPNRKGA RIWLGTYDSP VEAARAYDVA AFRLRGRKAI  240
LNFPLEVGTT IHGGYDGGAA VEVGKRKRPD SFSPAARVKM EAEEGGDDMT ETATDYNVKM  300
EVEEEGEKEG CDTAEKAAPL TPSSWMGFWD VSGDGIFSVP PLSPTSPSFS VISFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-26185247163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-26185247466ATERF1
3gcc_A5e-26185247466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2700900.0KF270090.1 Cleome hassleriana ERF, integrase-type DNA-binding superfamily protein, transducin, and protein kinase superfamily protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546131.10.0PREDICTED: ethylene-responsive transcription factor ERF104-like
SwissprotQ9FKG14e-88EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLT1YZL01e-105T1YZL0_9ROSI; ERF
STRINGXP_010546131.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.12e-85ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]