PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546158.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 342aa MW: 38969 Da PI: 8.2217

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.1	1.3e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv ++ +++ +++ evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_010546158.1 17 LPPGFRFHPTDEELITHYLHKKVLDSGFSA-KAVGEVDLNKSEPWELPWKAKMGEKEWYFFCLRDRKYPTGLRTNRATEAGYWKATGKDKEIYR- 109 79*************************9.88***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkg+kt+Wvmheyrle XP_010546158.1 110 GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 143 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-64	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	60.125	17	167	IPR003441	NAC domain
Pfam	PF02365	9.8E-30	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MENFCGFHKE DEERMDLPPG FRFHPTDEEL ITHYLHKKVL DSGFSAKAVG EVDLNKSEPW 60 ELPWKAKMGE KEWYFFCLRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL 120 VFYRGRAPKG QKTNWVMHEY RLEGKLSAHN LPKTAKNEWV ICRIFQKSAG GKKIPILGLV 180 RIGSFGTGLD PSGLPPLTDS WPEKTKTEPV YVPCFSNPTE NQGNTLSCFS NHVLSSIHNN 240 NNSTFPRISL HQTGSIPVSE NPQNPNPVLM QEQSVLRAMM MIESRGRHSF KTLSVSQETG 300 VSTEINTDIS SDFEFGRRQF DHQEDPSSSV GPLDLDESFW NY

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MENFCGFHKE DEERMDLPPG FRFHPTDEEL ITHYLHKKVL DSGFSAKAVG EVDLNKSEPW  60
ELPWKAKMGE KEWYFFCLRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KSLVGMKKTL  120
VFYRGRAPKG QKTNWVMHEY RLEGKLSAHN LPKTAKNEWV ICRIFQKSAG GKKIPILGLV  180
RIGSFGTGLD PSGLPPLTDS WPEKTKTEPV YVPCFSNPTE NQGNTLSCFS NHVLSSIHNN  240
NNSTFPRISL HQTGSIPVSE NPQNPNPVLM QEQSVLRAMM MIESRGRHSF KTLSVSQETG  300
VSTEINTDIS SDFEFGRRQF DHQEDPSSSV GPLDLDESFW NY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-55	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-55	14	173	17	174	NAC domain-containing protein 19
3swm_B	9e-55	14	173	17	174	NAC domain-containing protein 19
3swm_C	9e-55	14	173	17	174	NAC domain-containing protein 19
3swm_D	9e-55	14	173	17	174	NAC domain-containing protein 19
3swp_A	9e-55	14	173	17	174	NAC domain-containing protein 19
3swp_B	9e-55	14	173	17	174	NAC domain-containing protein 19
3swp_C	9e-55	14	173	17	174	NAC domain-containing protein 19
3swp_D	9e-55	14	173	17	174	NAC domain-containing protein 19
4dul_A	9e-55	14	173	14	171	NAC domain-containing protein 19
4dul_B	9e-55	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546158.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546158.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A178USB8	0.0	A0A178USB8_ARATH; NAC100
TrEMBL	D7MV19	0.0	D7MV19_ARALL; ANAC100/ATNAC5
STRING	XP_010546158.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]