PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546220.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 484aa MW: 53559.5 Da PI: 7.7148

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56	7.1e-18	248	297	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L ++veYI+ Lq XP_010546220.1 248 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVVEYIQFLQ 297 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-18	244	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-22	244	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.136	246	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.43E-15	248	300	No hit	No description
Pfam	PF00010	2.2E-15	248	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	252	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MELPQPRPFE TEGRKPSRDF LSLCSHSTAH PDPRTPPQGG YLKTHDFLRP LEHVGIRGGA 60 KEETSSVDTS ASKDPQPPSS VDQHVLPGGI GTYTISHIPY FHQRIPKPED SPMFTLAQAS 120 GCERNTDENS NCSSHAASGF TLWDESAGKK GGKKKENVEE RASLRADAAT AMGQWPGADH 180 RNSFSSGSSS QVSGLKSQSF MDMIRSAKVN SQDDDEEELV MRTESPSTSQ KVDLRVKADG 240 DRKPNTPRSK HSATEQRRRS KINDRFQMLR QLIPNSDQKR DKASFLLEVV EYIQFLQEKV 300 NKHEGSYYRG WNPEPGKLMN WRNSQRLPPE GSVAFAPKLE EKNNIPMPQT VIPNAKGGNA 360 MDPQCRAGKP FPVLTGSPIS QFPTRNVSEH RRDQTQPCDG VPSEGEGVIE SGSISIASVY 420 SQGLMKKLTQ ALESSGVDLT QASISVQIEL PTHSSLKDEE VRRTRPRTET DDDGGHKKLK 480 TDIH

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MELPQPRPFE TEGRKPSRDF LSLCSHSTAH PDPRTPPQGG YLKTHDFLRP LEHVGIRGGA  60
KEETSSVDTS ASKDPQPPSS VDQHVLPGGI GTYTISHIPY FHQRIPKPED SPMFTLAQAS  120
GCERNTDENS NCSSHAASGF TLWDESAGKK GGKKKENVEE RASLRADAAT AMGQWPGADH  180
RNSFSSGSSS QVSGLKSQSF MDMIRSAKVN SQDDDEEELV MRTESPSTSQ KVDLRVKADG  240
DRKPNTPRSK HSATEQRRRS KINDRFQMLR QLIPNSDQKR DKASFLLEVV EYIQFLQEKV  300
NKHEGSYYRG WNPEPGKLMN WRNSQRLPPE GSVAFAPKLE EKNNIPMPQT VIPNAKGGNA  360
MDPQCRAGKP FPVLTGSPIS QFPTRNVSEH RRDQTQPCDG VPSEGEGVIE SGSISIASVY  420
SQGLMKKLTQ ALESSGVDLT QASISVQIEL PTHSSLKDEE VRRTRPRTET DDDGGHKKLK  480
TDIH

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546220.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546220.1	0.0	PREDICTED: transcription factor BIM1 isoform X1
Refseq	XP_010546221.1	0.0	PREDICTED: transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	1e-159	BIM1_ARATH; Transcription factor BIM1
TrEMBL	V4LLR0	1e-172	V4LLR0_EUTSA; Uncharacterized protein
STRING	XP_010546220.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-147	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]