PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546222.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 483aa MW: 53488.4 Da PI: 7.7148

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546222.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56	7.1e-18	247	296	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L ++veYI+ Lq XP_010546222.1 247 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVVEYIQFLQ 296 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-18	243	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-22	243	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.136	245	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-15	247	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.45E-15	247	299	No hit	No description
SMART	SM00353	1.5E-13	251	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MELPQPRPFE TEGRKPSRDF LSLCSHSTAH PDPRTPPQGG YLKTHDFLRP LEHVGIRGGA 60 KEETSSVDTS ASKDPQPPSS VDQHVLPGGI GTYTISHIPY FHQRIPKPED SPMFTLAQAS 120 GCERNTDENS NCSSHAASGF TLWDESAGKK GGKKKENVEE RASLRDAATA MGQWPGADHR 180 NSFSSGSSSQ VSGLKSQSFM DMIRSAKVNS QDDDEEELVM RTESPSTSQK VDLRVKADGD 240 RKPNTPRSKH SATEQRRRSK INDRFQMLRQ LIPNSDQKRD KASFLLEVVE YIQFLQEKVN 300 KHEGSYYRGW NPEPGKLMNW RNSQRLPPEG SVAFAPKLEE KNNIPMPQTV IPNAKGGNAM 360 DPQCRAGKPF PVLTGSPISQ FPTRNVSEHR RDQTQPCDGV PSEGEGVIES GSISIASVYS 420 QGLMKKLTQA LESSGVDLTQ ASISVQIELP THSSLKDEEV RRTRPRTETD DDGGHKKLKT 480 DIH

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MELPQPRPFE TEGRKPSRDF LSLCSHSTAH PDPRTPPQGG YLKTHDFLRP LEHVGIRGGA  60
KEETSSVDTS ASKDPQPPSS VDQHVLPGGI GTYTISHIPY FHQRIPKPED SPMFTLAQAS  120
GCERNTDENS NCSSHAASGF TLWDESAGKK GGKKKENVEE RASLRDAATA MGQWPGADHR  180
NSFSSGSSSQ VSGLKSQSFM DMIRSAKVNS QDDDEEELVM RTESPSTSQK VDLRVKADGD  240
RKPNTPRSKH SATEQRRRSK INDRFQMLRQ LIPNSDQKRD KASFLLEVVE YIQFLQEKVN  300
KHEGSYYRGW NPEPGKLMNW RNSQRLPPEG SVAFAPKLEE KNNIPMPQTV IPNAKGGNAM  360
DPQCRAGKPF PVLTGSPISQ FPTRNVSEHR RDQTQPCDGV PSEGEGVIES GSISIASVYS  420
QGLMKKLTQA LESSGVDLTQ ASISVQIELP THSSLKDEEV RRTRPRTETD DDGGHKKLKT  480
DIH

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546222.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546222.1	0.0	PREDICTED: transcription factor BIM1 isoform X2
Swissprot	Q9LEZ3	1e-157	BIM1_ARATH; Transcription factor BIM1
TrEMBL	R0FDU1	1e-169	R0FDU1_9BRAS; Uncharacterized protein
TrEMBL	V4LLR0	1e-169	V4LLR0_EUTSA; Uncharacterized protein
STRING	XP_010546220.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-145	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]