PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546225.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 479aa MW: 53130.1 Da PI: 7.9887

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56	7e-18	243	292	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L ++veYI+ Lq XP_010546225.1 243 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVVEYIQFLQ 292 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.2E-22	239	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-18	239	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.136	241	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-15	243	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.65E-15	243	295	No hit	No description
SMART	SM00353	1.5E-13	247	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MELPQPRPFE TEGRKPSRDF LSLCSHSTAH PDPRTPPQGG YLKTHDFLRP LEHVGIRGGA 60 KEETSSVDTS ASKDPQPPSS VDQHVLPGGI GTYTISHIPY FHQRIPKPED SPMFTLAQAS 120 GCERNTDENS NCSSHAASGF TLWDESAGKK GGKKKENVEE RASLRAMGQW PGADHRNSFS 180 SGSSSQVSGL KSQSFMDMIR SAKVNSQDDD EEELVMRTES PSTSQKVDLR VKADGDRKPN 240 TPRSKHSATE QRRRSKINDR FQMLRQLIPN SDQKRDKASF LLEVVEYIQF LQEKVNKHEG 300 SYYRGWNPEP GKLMNWRNSQ RLPPEGSVAF APKLEEKNNI PMPQTVIPNA KGGNAMDPQC 360 RAGKPFPVLT GSPISQFPTR NVSEHRRDQT QPCDGVPSEG EGVIESGSIS IASVYSQGLM 420 KKLTQALESS GVDLTQASIS VQIELPTHSS LKDEEVRRTR PRTETDDDGG HKKLKTDIH

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MELPQPRPFE TEGRKPSRDF LSLCSHSTAH PDPRTPPQGG YLKTHDFLRP LEHVGIRGGA  60
KEETSSVDTS ASKDPQPPSS VDQHVLPGGI GTYTISHIPY FHQRIPKPED SPMFTLAQAS  120
GCERNTDENS NCSSHAASGF TLWDESAGKK GGKKKENVEE RASLRAMGQW PGADHRNSFS  180
SGSSSQVSGL KSQSFMDMIR SAKVNSQDDD EEELVMRTES PSTSQKVDLR VKADGDRKPN  240
TPRSKHSATE QRRRSKINDR FQMLRQLIPN SDQKRDKASF LLEVVEYIQF LQEKVNKHEG  300
SYYRGWNPEP GKLMNWRNSQ RLPPEGSVAF APKLEEKNNI PMPQTVIPNA KGGNAMDPQC  360
RAGKPFPVLT GSPISQFPTR NVSEHRRDQT QPCDGVPSEG EGVIESGSIS IASVYSQGLM  420
KKLTQALESS GVDLTQASIS VQIELPTHSS LKDEEVRRTR PRTETDDDGG HKKLKTDIH

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546225.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546225.1	0.0	PREDICTED: transcription factor BIM1 isoform X4
Swissprot	Q9LEZ3	1e-155	BIM1_ARATH; Transcription factor BIM1
TrEMBL	R0FDU1	1e-167	R0FDU1_9BRAS; Uncharacterized protein
STRING	XP_010546220.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-143	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]