PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546341.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CAMTA
Protein Properties Length: 1075aa    MW: 119660 Da    PI: 5.7662
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1188.66.2e-59191362118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+v+vl+cyYah+e+n++fq
  XP_010546341.1  19 LSEaQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSVDVLHCYYAHGEDNENFQ 113
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rrcyw+Le+++ +iv+vhylevk
  XP_010546341.1 114 RRCYWMLEQDFMHIVFVHYLEVK 136
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.50715141IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-8618136IPR005559CG-1 DNA-binding domain
PfamPF038594.7E-5221135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.9E-5454557IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.52E-15481567IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.203.0E-19674779IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.23E-18674775IPR020683Ankyrin repeat-containing domain
CDDcd002047.27E-16675773No hitNo description
PfamPF127961.9E-7675741IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.571681775IPR020683Ankyrin repeat-containing domain
SMARTSM002481600681710IPR002110Ankyrin repeat
PROSITE profilePS500889.244681713IPR002110Ankyrin repeat
PROSITE profilePS5008811.327714746IPR002110Ankyrin repeat
SMARTSM002480.0028714743IPR002110Ankyrin repeat
SMARTSM000150.55889911IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.82E-8889940IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.84891919IPR000048IQ motif, EF-hand binding site
PfamPF006129.7E-4891910IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092912934IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.395913937IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4915934IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1075 aa     Download sequence    Send to blast
MADRGSFGFG PRLDIGQLLS EAQHRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTIKEAHEK LKVGSVDVLH CYYAHGEDNE NFQRRCYWML  120
EQDFMHIVFV HYLEVKGNRT SSGGMKENNS NSINGTTSVN IDSTASPTST LSSLCEDADS  180
GDSHQASSSL QAFQDPKITT TQIRDTPDAG TSNSYYMGSF SGTREGWTSA AGMGTVSPFY  240
GNSVRESDSQ RSGDVSAWGA AFEDSTARHH NLPFNDLVTQ LPPSTTELLH VHGVENAGKG  300
ELFAADNGSK ELLRNPLQNQ VNWQIPVQDN LPLPNWPIDL VSQTGMGDDT DLTVFEQGAH  360
DNFETFSSLL NIRSQQSLGN GVHFPLPSVE SEYTPKLNPD ALQYETSTSL MLPRKPFLSK  420
EDSLKKVDSF SRWASKELGE MEDLQMQPSS SGGIAWTTVE CETAAAGSCL SPSLSQDQRF  480
TIIDFWPKWG HTDSEVEVMV IGTFLMNKQE VTKYNWSCMF GEVEVPAEIL VDGVLCCHAP  540
PHTVGQVSFY ITCSDRFACS EVREFDFLPG STKNLNVSDV YGTSTIEASL YMRFERLLAY  600
RSPVIERHIF EDVGDKRKHI SKIMLLKDER ESFFPGTNQK DSIEQEAKGH VIRDLFEEKL  660
YTWLIHKVTE DVKGPNILDE GGQGVLHFAA ALGYDWVIKP ILAAGVSINF RDANGWTALH  720
WAAFSGREQT VAVLVSLGAD AGALTDPSPE FPLGKTAADL ASGNGHKGIS GFLAESSLTS  780
YLEKLAMNES KENSSANSSG AKVVQTISER TATPMSYGDV PEALSLKDSL TAVCNATQAA  840
DRIHQVFRMQ SFQRKQLSQF GNEESDISDE LAVSFATAKT GKPGLNDGVV HAAAVNIQKK  900
YRGWKKRKEF LLIRQRIVKI QAHVRGHQVR KQYRTVIWSV GILEKVILRW RRKGSGLRGF  960
RRDAIAKQAK PETPVPPQEK EDDDYDFLKE GRKQTEERLQ KALTRVKSMV QYPEARAQYR  1020
RLLTVVEGFR ESEASSSGGA NTAEEEAAAA ANTDDDLLDI DSLLDDDTFM SIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546341.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546341.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLD7MR880.0D7MR88_ARALL; Calmodulin-binding protein
STRINGXP_010546341.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]